Levi Waldron

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Curtis HuttenhowerDepartment of Biostatistics, Harvard School of Public HealthVerified email at hsph.harvard.edu
Nicola SegataDepartment CIBIO, University of TrentoVerified email at unitn.it
Sean DavisUniversity of ColoradoVerified email at cuanschutz.edu
Ludwig GeistlingerCenter for Computational Biomedicine, Harvard Medical SchoolVerified email at hms.harvard.edu
Dirk GeversJanssen Human Microbiome InstituteVerified email at its.jnj.com
Igor JurisicaVerified email at ai.utoronto.ca
Wendy Sarah GarrettHarvardVerified email at hsph.harvard.edu
Giovanni ParmigianiProfessor Department of Data Science, DFCIVerified email at dfci.harvard.edu
Marcel M. Ramos PérezCUNY Graduate School of Public Health and Health PolicyVerified email at sph.cuny.edu
Markus RiesterNovartis Institutes for Biomedical ResearchVerified email at novartis.com
Michael BirrerProfessor Medicine HMSVerified email at partners.org
Eric Alan FranzosaSenior Research Scientist / Harvard T. H. Chan School of Public HealthVerified email at hsph.harvard.edu
Benjamin Haibe-KainsScientist (Principal Investigator), Princess Margaret Cancer Centre, University Health NetworkVerified email at uhnresearch.ca
Kasper D. HansenDepartment of Biostatistics, Johns Hopkins UniversityVerified email at jhsph.edu
Jennifer Beam DowdProfessor of Demography & Population Health, University of OxfordVerified email at demography.ox.ac.uk
Denis NashCUNY Institute for Implementation Science in Population Health, CUNY School of Public Health, CUNYVerified email at sph.cuny.edu
Fei-Fei LiuUniversity Health NetworkVerified email at rmp.uhn.ca
Sarah Gorrell KulkarniCUNY ISPHVerified email at sph.cuny.edu
McKaylee RobertsonCUNY Institute for Implementation Science in Population Health, CUNY School of Public Health, CUNYVerified email at sph.cuny.edu
Patricia Pintor dos ReisSão Paulo State University (UNESP)Verified email at unesp.br

Levi Waldron

City University of New York Graduate School of Public Health and Health Policy

Verified email at sph.cuny.edu - Homepage

Bioinformatics


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Metagenomic biomarker discovery and explanation N Segata, J Izard, L Waldron, D Gevers, L Miropolsky, WS Garrett, ... Genome biology 12, 1-18, 2011	13589	2011
Orchestrating high-throughput genomic analysis with Bioconductor W Huber, VJ Carey, R Gentleman, S Anders, M Carlson, BS Carvalho, ... Nature methods 12 (2), 115-121, 2015	3679	2015
Metagenomic microbial community profiling using unique clade-specific marker genes N Segata, L Waldron, A Ballarini, V Narasimhan, O Jousson, ... Nature methods 9 (8), 811-814, 2012	1967	2012
Multivariable association discovery in population-scale meta-omics studies H Mallick, A Rahnavard, LJ McIver, S Ma, Y Zhang, LH Nguyen, TL Tickle, ... PLoS computational biology 17 (11), e1009442, 2021	1417	2021
Stem cell gene expression programs influence clinical outcome in human leukemia K Eppert, K Takenaka, ER Lechman, L Waldron, B Nilsson, P Van Galen, ... Nature medicine 17 (9), 1086-1093, 2011	1213	2011
Composition of the adult digestive tract bacterial microbiome based on seven mouth surfaces, tonsils, throat and stool samples N Segata, SK Haake, P Mannon, KP Lemon, L Waldron, D Gevers, ... Genome biology 13, 1-18, 2012	1196	2012
Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer J Wirbel, PT Pyl, E Kartal, K Zych, A Kashani, A Milanese, JS Fleck, ... Nature medicine 25 (4), 679-689, 2019	1033	2019
Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation AM Thomas, P Manghi, F Asnicar, E Pasolli, F Armanini, M Zolfo, ... Nature medicine 25 (4), 667-678, 2019	810	2019
Orchestrating single-cell analysis with Bioconductor RA Amezquita, ATL Lun, E Becht, VJ Carey, LN Carpp, L Geistlinger, ... Nature methods 17 (2), 137-145, 2020	782	2020
Microbiome connections with host metabolism and habitual diet from 1,098 deeply phenotyped individuals F Asnicar, SE Berry, AM Valdes, LH Nguyen, G Piccinno, DA Drew, ... Nature medicine 27 (2), 321-332, 2021	765	2021
Relating the metatranscriptome and metagenome of the human gut EA Franzosa, XC Morgan, N Segata, L Waldron, J Reyes, AM Earl, ... Proceedings of the National Academy of Sciences 111 (22), E2329-E2338, 2014	709	2014
Assessment of colorectal cancer molecular features along bowel subsites challenges the conception of distinct dichotomy of proximal versus distal colorectum M Yamauchi, T Morikawa, A Kuchiba, Y Imamura, ZR Qian, R Nishihara, ... Gut 61 (6), 847-854, 2012	663	2012
A guide to enterotypes across the human body: meta-analysis of microbial community structures in human microbiome datasets O Koren, D Knights, A Gonzalez, L Waldron, N Segata, R Knight, ... PLoS computational biology 9 (1), e1002863, 2013	610	2013
Machine learning meta-analysis of large metagenomic datasets: tools and biological insights E Pasolli, DT Truong, F Malik, L Waldron, N Segata PLoS computational biology 12 (7), e1004977, 2016	592	2016
Comprehensive MicroRNA profiling for head and neck squamous cell carcinomas ABY Hui, M Lenarduzzi, T Krushel, L Waldron, M Pintilie, W Shi, ... Clinical cancer research 16 (4), 1129-1139, 2010	496	2010
Accessible, curated metagenomic data through ExperimentHub E Pasolli, L Schiffer, P Manghi, A Renson, V Obenchain, DT Truong, ... Nature methods 14 (11), 1023-1024, 2017	428	2017
Transparency and reproducibility in artificial intelligence B Haibe-Kains, GA Adam, A Hosny, F Khodakarami, ... Nature 586 (7829), E14-E16, 2020	416	2020
Racial/ethnic disparities in genomic sequencing DE Spratt, T Chan, L Waldron, C Speers, FY Feng, OO Ogunwobi, ... JAMA oncology 2 (8), 1070-1074, 2016	329	2016
mRNA transcript quantification in archival samples using multiplexed, color-coded probes PP Reis, L Waldron, RS Goswami, W Xu, Y Xuan, B Perez-Ordonez, ... BMC biotechnology 11, 1-10, 2011	318	2011
bioBakery: a meta’omic analysis environment LJ McIver, G Abu-Ali, EA Franzosa, R Schwager, XC Morgan, L Waldron, ... Bioinformatics 34 (7), 1235-1237, 2018	312	2018

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