Ignacio Arganda-Carreras

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Johannes SchindelinVerified email at wisc.edu
Tobias PietzschCSBD/MPI-CBGVerified email at mpi-cbg.de
Stephan PreibischHHMI Janelia Research CampusVerified email at janelia.hhmi.org
Albert CardonaMRC LMB and University of CambridgeVerified email at mrc-lmb.cam.ac.uk
Curtis RuedenUniversity of Wisconsin-MadisonVerified email at wisc.edu
Stephan SaalfeldHHMI Janelia Research CampusVerified email at janelia.hhmi.org
Pavel TomancakResearch Group Leader at the Max Planck Institute of Molecular Cell Biology and Genetics in DresdenVerified email at mpi-cbg.de
Kevin EliceiriRRF Walter H. Helmerich Professor Medical Physics, Biomedical Engineering, UW-MadisonVerified email at wisc.edu
Mark Longair(Previously) Postdoctoral researcher, Institute of Neuroinformatics, Uni / ETH ZürichVerified email at longair.net
Jean-Yves TinevezInstitut Pasteur, Paris, FranceVerified email at pasteur.fr
Benjamin SchmidOptical Imaging Centre ErlangenVerified email at fau.de
Daniel James Whitemetrology engineer at infineonVerified email at infineon.com
Fadi DornaikaIKERBASQUE Research FoundationVerified email at ehu.eus
H Sebastian SeungProfessor, Princeton Neuroscience Institute and Computer Science Dept.Verified email at princeton.edu
Arrate Muñoz BarrutiaProfessor, Univ. Carlos III de Madrid; Instituto de Investigación Sanitaria Gregorio MarañónVerified email at ing.uc3m.es
Carlos Ortiz de SolorzanoFull Professor - CIMA - Universidad de NavarraVerified email at unav.es
Philippe AndreyResearch Director (DR2), Institut National de la Recherche Agronomique (INRA)Verified email at inrae.fr
Daniel Franco-BarrancoPostdoc Cardona's lab at MRC LMB - Cambridge University and DIPCVerified email at mrc-lmb.cam.ac.uk
David LeglandINRAEVerified email at inrae.fr
Carlos Oscar S. Sorzano (ORCID:000...National Center of Biotechnology (CSIC)Verified email at cnb.csic.es

Ignacio Arganda-Carreras

Ikerbasque Associate Researcher at University of the Basque Country, Biofisika Institute and DIPC

Verified email at ehu.eus - Homepage

Machine Learning Image Processing Computer Vision Bioimage Analysis Neuroscience


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Fiji: an open-source platform for biological-image analysis J Schindelin, I Arganda-Carreras, E Frise, V Kaynig, M Longair, T Pietzsch, ... Nature Methods 9 (7), 676–682, 2012	62000	2012
Trainable Weka Segmentation: a machine learning tool for microscopy pixel classification I Arganda-Carreras, V Kaynig, C Rueden, KW Eliceiri, J Schindelin, ... Bioinformatics 33 (15), 2424-2426, 2017	2244	2017
BoneJ: free and extensible bone image analysis in ImageJ M Doube, MM Kłosowski, I Arganda-Carreras, FP Cordelières, ... Bone 47 (6), 1076-1079, 2010	2241	2010
MorphoLibJ: integrated library and plugins for mathematical morphology with ImageJ D Legland, I Arganda-Carreras, P Andrey Bioinformatics 32 (22), 3532-3534, 2016	1240	2016
TrakEM2 software for neural circuit reconstruction A Cardona, S Saalfeld, J Schindelin, I Arganda-Carreras, S Preibisch, ... PloS one 7 (6), e38011, 2012	1017	2012
3D reconstruction of histological sections: Application to mammary gland tissue I Arganda‐Carreras, R Fernández‐González, A Muñoz‐Barrutia, ... Microscopy research and technique 73 (11), 1019-1029, 2010	708	2010
Serial two-photon tomography for automated ex vivo mouse brain imaging T Ragan, LR Kadiri, KU Venkataraju, K Bahlmann, J Sutin, J Taranda, ... Nature methods 9 (3), 255-258, 2012	703	2012
Consistent and elastic registration of histological sections using vector-spline regularization I Arganda-Carreras, COS Sorzano, R Marabini, JM Carazo, ... Computer Vision Approaches to Medical Image Analysis: Second International …, 2006	463	2006
Crowdsourcing the creation of image segmentation algorithms for connectomics I Arganda-Carreras, SC Turaga, DR Berger, D Cireşan, A Giusti, ... Frontiers in neuroanatomy 9, 152591, 2015	391	2015
Mapping social behavior-induced brain activation at cellular resolution in the mouse Y Kim, KU Venkataraju, K Pradhan, C Mende, J Taranda, SC Turaga, ... Cell reports 10 (2), 292-305, 2015	336	2015
Vision-Based Fall Detection with Convolutional Neural Networks A Núñez-Marcos, G Azkune, I Arganda-Carreras Wireless Communications and Mobile Computing 2017, 1-16, 2017	308	2017
Deep learning on chest X-ray images to detect and evaluate pneumonia cases at the era of COVID-19 K Hammoudi, H Benhabiles, M Melkemi, F Dornaika, I Arganda-Carreras, ... Journal of medical systems 45 (7), 75, 2021	231	2021
ANHIR: automatic non-rigid histological image registration challenge J Borovec, J Kybic, I Arganda-Carreras, DV Sorokin, G Bueno, ... IEEE transactions on medical imaging 39 (10), 3042-3052, 2020	146	2020
MitoEM dataset: Large-scale 3D mitochondria instance segmentation from EM images D Wei, Z Lin, D Franco-Barranco, N Wendt, X Liu, W Yin, X Huang, ... International Conference on Medical Image Computing and Computer-Assisted …, 2020	114	2020
Avoiding a replication crisis in deep-learning-based bioimage analysis RF Laine, I Arganda-Carreras, R Henriques, G Jacquemet Nature methods 18 (10), 1136-1144, 2021	100	2021
Multicolor multiscale brain imaging with chromatic multiphoton serial microscopy L Abdeladim, KS Matho, S Clavreul, P Mahou, JM Sintes, X Solinas, ... Nature communications 10 (1), 1662, 2019	96	2019
An optimized approach to perform bone histomorphometry D Malhan, M Muelke, S Rosch, AB Schaefer, F Merboth, D Weisweiler, ... Frontiers in endocrinology 9, 666, 2018	93	2018
Olfactory projectome in the zebrafish forebrain revealed by genetic single-neuron labelling N Miyasaka, I Arganda-Carreras, N Wakisaka, M Masuda, U Sümbül, ... Nature communications 5 (1), 3639, 2014	83	2014
Efficient and compact face descriptor for driver drowsiness detection A Moujahid, F Dornaika, I Arganda-Carreras, J Reta Expert Systems with Applications 168, 114334, 2021	79	2021
Identifying neuronal lineages of Drosophila by sequence analysis of axon tracts A Cardona, S Saalfeld, I Arganda-Carreras, W Pereanu, J Schindelin, ... The Journal of Neuroscience 30 (22), 7538-7553, 2010	70	2010

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