Iddo Friedberg
Iddo Friedberg
Associate Professor of Bioinformatics, Iowa State University
Verified email at - Homepage
Cited by
Cited by
Biopython: freely available Python tools for computational molecular biology and bioinformatics
PJA Cock, T Antao, JT Chang, BA Chapman, CJ Cox, A Dalke, I Friedberg, ...
Bioinformatics 25 (11), 1422, 2009
Protein tyrosine phosphatases in the human genome
A Alonso, J Sasin, N Bottini, I Friedberg, I Friedberg, A Osterman, ...
Cell 117 (6), 699-711, 2004
A large-scale evaluation of computational protein function prediction
P Radivojac, WT Clark, TR Oron, AM Schnoes, T Wittkop, A Sokolov, ...
Nature methods 10 (3), 221-227, 2013
A primer on metagenomics
JC Wooley, A Godzik, I Friedberg
PLoS computational biology 6 (2), e1000667, 2010
Automated protein function prediction—the genomic challenge
I Friedberg
Briefings in bioinformatics 7 (3), 225-242, 2006
An expanded evaluation of protein function prediction methods shows an improvement in accuracy
Y Jiang, TR Oron, WT Clark, AR Bankapur, DD Andrea, R Lepore, ...
Genome Biology 17 (184), 2016
The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens
N Zhou, Y Jiang, TR Bergquist, AJ Lee, BZ Kacsoh, AW Crocker, ...
Genome biology 20, 1-23, 2019
Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity.
HGF Pope WH, Bowman CA, Russell DA, Jacobs-Sera D, Asai DJ, Cresawn SG ...
eLife 4, e06416, 2015
A metagenomic study of diet-dependent interaction between gut microbiota and host in infants reveals differences in immune response
S Schwartz, I Friedberg, IV Ivanov, LA Davidson, JS Goldsby, DB Dahl, ...
Genome biology 13, 1-16, 2012
Submitochondrial distribution of three key steroidogenic proteins (steroidogenic acute regulatory protein and cytochrome P450scc and 3β-hydroxysteroid dehydrogenase isomerase …
N Cherradi, MF Rossier, MB Vallotton, R Timberg, I Friedberg, J Orly, ...
Journal of Biological Chemistry 272 (12), 7899-7907, 1997
Biases in the experimental annotations of protein function and their effect on our understanding of protein function space
AM Schnoes, DC Ream, AW Thorman, PC Babbitt, I Friedberg
PLoS computational biology 9 (5), e1003063, 2013
Host-microbe interactions in the neonatal intestine: role of human milk oligosaccharides
SM Donovan, M Wang, M Li, I Friedberg, SL Schwartz, RS Chapkin
Advances in Nutrition 3 (3), 450S-455S, 2012
Identifying Antimicrobial Peptides using Word Embedding with Deep Recurrent Neural Networks
MN Hamid, I Friedberg
Bioinformatics (OUP), 2018
Maize GO annotation—methods, evaluation, and review (maize‐GAMER)
K Wimalanathan, I Friedberg, CM Andorf, CJ Lawrence‐Dill
Plant direct 2 (4), e00052, 2018
Protist diversity in a permanently ice-covered Antarctic lake during the polar night transition
S Bielewicz, E Bell, W Kong, I Friedberg, JC Priscu, RM Morgan-Kiss
The ISME journal 5 (9), 1559-1564, 2011
Connecting the protein structure universe by using sparse recurring fragments
I Friedberg, A Godzik
Structure 13 (8), 1213-1224, 2005
Persistently conserved positions in structurally similar, sequence dissimilar proteins: roles in preserving protein fold and function
I Friedberg, H Margalit
Protein Science 11 (2), 350-360, 2002
A large scale prediction of bacteriocin gene blocks suggests a wide functional spectrum for bacteriocins
JT Morton, SD Freed, SW Lee, I Friedberg
BMC bioinformatics 16, 1-9, 2015
Computational protein function prediction: are we making progress?
A Godzik, M Jambon, I Friedberg
Cellular and molecular life sciences 64, 2505-2511, 2007
The COMBREX project: design, methodology, and initial results
BP Anton, YC Chang, P Brown, HP Choi, LL Faller, J Guleria, Z Hu, ...
PLoS biology 11 (8), e1001638, 2013
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