Suhas Rao
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A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
SSP Rao, MH Huntley, NC Durand, EK Stamenova, ID Bochkov, ...
Cell 159 (7), 1665-1680, 2014
Juicer Provides a One-Click System for Analyzing Loop-Resolution Hi-C Experiments
NC Durand, MS Shamim, I Machol, SSP Rao, MH Huntley, ES Lander, ...
Cell Systems 3 (1), 95-98, 2016
Chromatin extrusion explains key features of loop and domain formation in wild-type and engineered genomes
AL Sanborn, SSP Rao, SC Huang, NC Durand, MH Huntley, AI Jewett, ...
Proceedings of the National Academy of Sciences 112 (47), E6456-E6465, 2015
Cohesin Loss Eliminates All Loop Domains
SSP Rao, SC Huang, BG St Hilaire, JM Engreitz, EM Perez, ...
Cell 171 (2), 305-320. e24, 2017
The Energetics and Physiological Impact of Cohesin Extrusion
L Vian, A Pękowska, SSP Rao, KR Kieffer-Kwon, S Jung, L Baranello, ...
Cell 173 (5), 1165-1178. e20, 2018
Genome Organization Drives Chromosome Fragility
A Canela, Y Maman, S Jung, N Wong, E Callen, A Day, KR Kieffer-Kwon, ...
Cell 170 (3), 507-521. e18, 2017
Walking along chromosomes with super-resolution imaging, contact maps, and integrative modeling
G Nir, I Farabella, C Pérez Estrada, CG Ebeling, BJ Beliveau, HM Sasaki, ...
PLoS genetics 14 (12), e1007872, 2018
A Pliable Mediator Acts as a Functional Rather Than an Architectural Bridge between Promoters and Enhancers
L El Khattabi, H Zhao, J Kalchschmidt, N Young, S Jung, P Van Blerkom, ...
Cell 178 (5), 1145-1158. e20, 2019
Myc Regulates Chromatin Decompaction and Nuclear Architecture during B Cell Activation
KR Kieffer-Kwon, K Nimura, SSP Rao, J Xu, S Jung, A Pekowska, M Dose, ...
Molecular Cell 67 (4), 566-578. e10, 2017
3D genomics across the tree of life reveals condensin II as a determinant of architecture type
C Hoencamp, O Dudchenko, AMO Elbatsh, S Brahmachari, ...
Science 372 (6545), 984-989, 2021
Cohesin depleted cells rebuild functional nuclear compartments after endomitosis
M Cremer, K Brandstetter, A Maiser, SSP Rao, VJ Schmid, M Guirao-Ortiz, ...
Nature Communications 11 (1), 6146, 2020
Topologically Associated Domains Delineate Susceptibility to Somatic Hypermutation
F Senigl, Y Maman, RK Dinesh, J Alinikula, RB Seth, L Pecnova, ...
Cell Reports 29 (12), 3902-3915. e8, 2019
Chromatin alternates between A and B compartments at kilobase scale for subgenic organization
HL Harris, H Gu, M Olshansky, A Wang, I Farabella, Y Eliaz, A Kalluchi, ...
Nature Communications 14 (1), 3303, 2023
A rapid, low-cost, and highly sensitive SARS-CoV-2 diagnostic based on whole-genome sequencing
PA Adastra, NC Durand, N Mitra, SG Pulido, R Mahajan, A Blackburn, ...
BioRxiv, 2020.04. 25.061499, 2020
Genome-wide association study of human immunodeficiency virus (HIV)-1 coreceptor usage in treatment-naive patients from an AIDS clinical trials group study
TJ Henrich, PJ McLaren, SSP Rao, NH Lin, E Hanhauser, F Giguel, ...
Open forum infectious diseases 1 (1), ofu018, 2014
Differential use of CCR5 by HIV-1 clinical isolates resistant to small-molecule CCR5 antagonists
TJ Henrich, NRP Lewine, SH Lee, SSP Rao, R Berro, RM Gulick, ...
Antimicrobial agents and chemotherapy 56 (4), 1931-1935, 2012
The Hi-Culfite assay reveals relationships between chromatin contacts and DNA methylation state
EK Stamenova, N Durand, O Dudchenko, MS Shamim, SC Huang, ...
bioRxiv, 481283, 2018
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