|A data integration methodology for systems biology|
D Hwang, AG Rust, S Ramsey, JJ Smith, DM Leslie, AD Weston, ...
Proceedings of the National Academy of Sciences 102 (48), 17296-17301, 2005
|Transport in two-dimensional paper networks|
E Fu, SA Ramsey, P Kauffman, B Lutz, P Yager
Microfluidics and nanofluidics 10 (1), 29-35, 2011
|Function of C/EBPδ in a regulatory circuit that discriminates between transient and persistent TLR4-induced signals|
V Litvak, SA Ramsey, AG Rust, DE Zak, KA Kennedy, AE Lampano, ...
Nature immunology 10 (4), 437-443, 2009
|Dizzy: stochastic simulation of large-scale genetic regulatory networks|
S Ramsey, D Orrell, H Bolouri
Journal of bioinformatics and computational biology 3 (02), 415-436, 2005
|Cholesterol loading reprograms the microRNA-143/145–myocardin axis to convert aortic smooth muscle cells to a dysfunctional macrophage-like phenotype|
Y Vengrenyuk, H Nishi, X Long, M Ouimet, N Savji, FO Martinez, ...
Arteriosclerosis, thrombosis, and vascular biology 35 (3), 535-546, 2015
|Inflammatory Ly6Chi monocytes and their conversion to M2 macrophages drive atherosclerosis regression|
K Rahman, Y Vengrenyuk, SA Ramsey, NR Vila, NM Girgis, J Liu, ...
The Journal of clinical investigation 127 (8), 2904-2915, 2017
|Enhanced sensitivity of lateral flow tests using a two-dimensional paper network format|
E Fu, T Liang, J Houghtaling, S Ramachandran, SA Ramsey, B Lutz, ...
Analytical chemistry 83 (20), 7941-7946, 2011
|Gene expression dynamics in the macrophage exhibit criticality|
M Nykter, ND Price, M Aldana, SA Ramsey, SA Kauffman, LE Hood, ...
Proceedings of the National Academy of Sciences 105 (6), 1897-1900, 2008
|Method and system for directing requests for content to a content server based on network performance|
M Ayers, BJ Black, C Brown, J Carlson, D Cohn, S Laird, J Miller, ...
US Patent 7,555,542, 2009
|Single-cell analysis of fate-mapped macrophages reveals heterogeneity, including stem-like properties, during atherosclerosis progression and regression|
JD Lin, H Nishi, J Poles, X Niu, C Mccauley, K Rahman, EJ Brown, ...
JCI insight 4 (4), 2019
|Uncovering a macrophage transcriptional program by integrating evidence from motif scanning and expression dynamics|
SA Ramsey, SL Klemm, DE Zak, KA Kennedy, V Thorsson, B Li, ...
PLoS computational biology 4 (3), e1000021, 2008
|Dynamic analysis of MAPK signaling using a high-throughput microfluidic single-cell imaging platform|
RJ Taylor, D Falconnet, A Niemistö, SA Ramsey, S Prinz, I Shmulevich, ...
Proceedings of the National Academy of Sciences 106 (10), 3758-3763, 2009
|ATF3, an adaptive-response gene, enhances TGFβ signaling and cancer-initiating cell features in breast cancer cells|
X Yin, CC Wolford, YS Chang, SJ McConoughey, SA Ramsey, A Aderem, ...
Journal of cell science 123 (20), 3558-3565, 2010
|ATF3 protects against atherosclerosis by suppressing 25-hydroxycholesterol–induced lipid body formation|
ES Gold, SA Ramsey, MJ Sartain, J Selinummi, I Podolsky, DJ Rodriguez, ...
Journal of Experimental Medicine 209 (4), 807-817, 2012
|Method and system for optimizing routing through multiple available internet route providers|
A Ahuja, M Ayers, B Black, C Brown, DT Cohn, S Ramsey, O Ronen, ...
US Patent 6,981,055, 2005
|Dual feedback loops in the GAL regulon suppress cellular heterogeneity in yeast|
SA Ramsey, JJ Smith, D Orrell, M Marelli, TW Petersen, P de Atauri, ...
Nature genetics 38 (9), 1082-1087, 2006
|A systems biology approach to understanding atherosclerosis|
SA Ramsey, ES Gold, A Aderem
EMBO molecular medicine 2 (3), 79-89, 2010
|O (N) quantum fields in curved spacetime|
SA Ramsey, BL Hu
Physical Review D 56 (2), 661, 1997
|Nonequilibrium inflaton dynamics and reheating: Back reaction of parametric particle creation and curved spacetime effects|
SA Ramsey, BL Hu
Physical Review D 56 (2), 678, 1997
|Genome-wide histone acetylation data improve prediction of mammalian transcription factor binding sites|
SA Ramsey, TA Knijnenburg, KA Kennedy, DE Zak, M Gilchrist, ES Gold, ...
Bioinformatics 26 (17), 2071-2075, 2010