Olga Dudchenko
Olga Dudchenko
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De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds
O Dudchenko, SS Batra, AD Omer, SK Nyquist, M Hoeger, NC Durand, ...
Science 356 (6333), 92-95, 2017
The genome sequence of segmental allotetraploid peanut Arachis hypogaea
DJ Bertioli, J Jenkins, J Clevenger, O Dudchenko, D Gao, G Seijo, ...
Nature genetics 51 (5), 877-884, 2019
Improved reference genome of Aedes aegypti informs arbovirus vector control
BJ Matthews, O Dudchenko, SB Kingan, S Koren, I Antoshechkin, ...
Nature 563 (7732), 501-507, 2018
Deletion of DXZ4 on the human inactive X chromosome alters higher-order genome architecture
EM Darrow, MH Huntley, O Dudchenko, EK Stamenova, NC Durand, ...
Proceedings of the National Academy of Sciences 113 (31), E4504-E4512, 2016
The Juicebox Assembly Tools module facilitates de novo assembly of mammalian genomes with chromosome-length scaffolds for under $1000
O Dudchenko, MS Shamim, SS Batra, NC Durand, NT Musial, R Mostofa, ...
BioRxiv, 254797, 2018
3D genomics across the tree of life reveals condensin II as a determinant of architecture type
C Hoencamp, O Dudchenko, AMO Elbatsh, S Brahmachari, ...
Science 372 (6545), 984-989, 2021
The gene-rich genome of the scallop Pecten maximus
NJ Kenny, SA McCarthy, O Dudchenko, K James, E Betteridge, C Corton, ...
GigaScience 9 (5), giaa037, 2020
Hybrid de novo genome assembly and centromere characterization of the gray mouse lemur (Microcebus murinus)
PA Larsen, RA Harris, Y Liu, SC Murali, CR Campbell, AD Brown, ...
BMC biology 15, 1-17, 2017
Canfam_GSD: De novo chromosome-length genome assembly of the German Shepherd Dog (Canis lupus familiaris) using a combination of long reads, optical …
MA Field, BD Rosen, O Dudchenko, EKF Chan, AE Minoche, RJ Edwards, ...
GigaScience 9 (4), giaa027, 2020
Genome-wide diversity in the California condor tracks its prehistoric abundance and decline
JA Robinson, RCK Bowie, O Dudchenko, EL Aiden, SL Hendrickson, ...
Current Biology 31 (13), 2939-2946. e5, 2021
Mathematical modeling of intravascular blood coagulation under wall shear stress
OS Rukhlenko, OA Dudchenko, KE Zlobina, GT Guria
PloS one 10 (7), e0134028, 2015
A rapid, low-cost, and highly sensitive SARS-CoV-2 diagnostic based on whole-genome sequencing
PA Adastra, NC Durand, N Mitra, SG Pulido, R Mahajan, A Blackburn, ...
Plos one 18 (11), e0294283, 2023
Chromatin alternates between A and B compartments at kilobase scale for subgenic organization
HL Harris, H Gu, M Olshansky, A Wang, I Farabella, Y Eliaz, A Kalluchi, ...
Nature Communications 14 (1), 3303, 2023
Chromosome-length genome assembly and structural variations of the primal Basenji dog (Canis lupus familiaris) genome
RJ Edwards, MA Field, JM Ferguson, O Dudchenko, J Keilwagen, ...
BMC genomics 22, 1-19, 2021
Chromosomal‐level genome assembly of the scimitar‐horned oryx: Insights into diversity and demography of a species extinct in the wild
E Humble, P Dobrynin, H Senn, J Chuven, AF Scott, DW Mohr, ...
Molecular ecology resources 20 (6), 1668-1681, 2020
The ENCODE uniform analysis pipelines
BC Hitz, JW Lee, O Jolanki, MS Kagda, K Graham, P Sud, I Gabdank, ...
Research Square, 2023
Improved Aedes aegypti mosquito reference genome assembly enables biological discovery and vector control
BJ Matthews, O Dudchenko, S Kingan, S Koren, I Antoshechkin, ...
BioRxiv, 240747, 2017
Chromosome-length genome assemblies of six legume species provide insights into genome organization, evolution, and agronomic traits for crop improvement
V Garg, O Dudchenko, J Wang, AW Khan, S Gupta, P Kaur, K Han, ...
Journal of Advanced Research 42, 315-329, 2022
Fine-mapping of nuclear compartments using ultra-deep Hi-C shows that active promoter and enhancer elements localize in the active A compartment even when adjacent sequences do not
H Gu, H Harris, M Olshansky, Y Eliaz, A Krishna, A Kalluchi, M Jacobs, ...
BioRxiv, 2021.10. 03.462599, 2021
High-quality reference genome for Clonorchis sinensis
ND Young, AJ Stroehlein, L Kinkar, T Wang, WM Sohn, BCH Chang, ...
Genomics 113 (3), 1605-1615, 2021
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