| De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds O Dudchenko, SS Batra, AD Omer, SK Nyquist, M Hoeger, NC Durand, ... Science 356 (6333), 92-95, 2017 | 1718 | 2017 |
| The genome sequence of segmental allotetraploid peanut Arachis hypogaea DJ Bertioli, J Jenkins, J Clevenger, O Dudchenko, D Gao, G Seijo, ... Nature genetics 51 (5), 877-884, 2019 | 504 | 2019 |
| Improved reference genome of Aedes aegypti informs arbovirus vector control BJ Matthews, O Dudchenko, SB Kingan, S Koren, I Antoshechkin, ... Nature 563 (7732), 501-507, 2018 | 455 | 2018 |
| Deletion of DXZ4 on the human inactive X chromosome alters higher-order genome architecture EM Darrow, MH Huntley, O Dudchenko, EK Stamenova, NC Durand, ... Proceedings of the National Academy of Sciences 113 (31), E4504-E4512, 2016 | 289 | 2016 |
| The Juicebox Assembly Tools module facilitates de novo assembly of mammalian genomes with chromosome-length scaffolds for under $1000 O Dudchenko, MS Shamim, SS Batra, NC Durand, NT Musial, R Mostofa, ... BioRxiv, 254797, 2018 | 243 | 2018 |
| 3D genomics across the tree of life reveals condensin II as a determinant of architecture type C Hoencamp, O Dudchenko, AMO Elbatsh, S Brahmachari, ... Science 372 (6545), 984-989, 2021 | 169 | 2021 |
| Hybrid de novo genome assembly and centromere characterization of the gray mouse lemur (Microcebus murinus) PA Larsen, RA Harris, Y Liu, SC Murali, CR Campbell, AD Brown, ... BMC biology 15, 1-17, 2017 | 60 | 2017 |
| The gene-rich genome of the scallop Pecten maximus NJ Kenny, SA McCarthy, O Dudchenko, K James, E Betteridge, C Corton, ... GigaScience 9 (5), giaa037, 2020 | 57 | 2020 |
| Canfam_GSD: De novo chromosome-length genome assembly of the German Shepherd Dog (Canis lupus familiaris) using a combination of long reads, optical … MA Field, BD Rosen, O Dudchenko, EKF Chan, AE Minoche, RJ Edwards, ... GigaScience 9 (4), giaa027, 2020 | 48 | 2020 |
| Genome-wide diversity in the California condor tracks its prehistoric abundance and decline JA Robinson, RCK Bowie, O Dudchenko, EL Aiden, SL Hendrickson, ... Current Biology 31 (13), 2939-2946. e5, 2021 | 44 | 2021 |
| Method for in situ determination of nucleic acid proximity E Lieberman-aiden, S Rao, E Stamenova, O Dudchenko, E Lander US Patent 11,279,974, 2022 | 40 | 2022 |
| Mathematical modeling of intravascular blood coagulation under wall shear stress OS Rukhlenko, OA Dudchenko, KE Zlobina, GT Guria PloS one 10 (7), e0134028, 2015 | 38 | 2015 |
| Chromatin alternates between A and B compartments at kilobase scale for subgenic organization HL Harris, H Gu, M Olshansky, A Wang, I Farabella, Y Eliaz, A Kalluchi, ... Nature Communications 14 (1), 3303, 2023 | 36 | 2023 |
| A rapid, low-cost, and highly sensitive SARS-CoV-2 diagnostic based on whole-genome sequencing PA Adastra, NC Durand, N Mitra, SG Pulido, R Mahajan, A Blackburn, ... Plos one 18 (11), e0294283, 2023 | 35 | 2023 |
| The ENCODE uniform analysis pipelines BC Hitz, JW Lee, O Jolanki, MS Kagda, K Graham, P Sud, I Gabdank, ... Research Square, 2023 | 34 | 2023 |
| Chromosome-length genome assembly and structural variations of the primal Basenji dog (Canis lupus familiaris) genome RJ Edwards, MA Field, JM Ferguson, O Dudchenko, J Keilwagen, ... BMC genomics 22, 1-19, 2021 | 34 | 2021 |
| Chromosome-length genome assemblies of six legume species provide insights into genome organization, evolution, and agronomic traits for crop improvement V Garg, O Dudchenko, J Wang, AW Khan, S Gupta, P Kaur, K Han, ... Journal of Advanced Research 42, 315-329, 2022 | 31 | 2022 |
| Chromosomal‐level genome assembly of the scimitar‐horned oryx: Insights into diversity and demography of a species extinct in the wild E Humble, P Dobrynin, H Senn, J Chuven, AF Scott, DW Mohr, ... Molecular ecology resources 20 (6), 1668-1681, 2020 | 31 | 2020 |
| Improved Aedes aegypti mosquito reference genome assembly enables biological discovery and vector control BJ Matthews, O Dudchenko, S Kingan, S Koren, I Antoshechkin, ... BioRxiv, 240747, 2017 | 31 | 2017 |
| Fine-mapping of nuclear compartments using ultra-deep Hi-C shows that active promoter and enhancer elements localize in the active A compartment even when adjacent sequences do not H Gu, H Harris, M Olshansky, Y Eliaz, A Krishna, A Kalluchi, M Jacobs, ... BioRxiv, 2021.10. 03.462599, 2021 | 28 | 2021 |
Erez Lieberman AidenBaylor College of Medicine, Rice UniversityVerified email at math.harvard.edu
