Olga Dudchenko
Olga Dudchenko
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De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds
O Dudchenko, SS Batra, AD Omer, SK Nyquist, M Hoeger, NC Durand, ...
Science 356 (6333), 92-95, 2017
The genome sequence of segmental allotetraploid peanut Arachis hypogaea
DJ Bertioli, J Jenkins, J Clevenger, O Dudchenko, D Gao, G Seijo, ...
Nature genetics 51 (5), 877-884, 2019
Improved reference genome of Aedes aegypti informs arbovirus vector control
BJ Matthews, O Dudchenko, SB Kingan, S Koren, I Antoshechkin, ...
Nature 563 (7732), 501-507, 2018
Deletion of DXZ4 on the human inactive X chromosome alters higher-order genome architecture
EM Darrow, MH Huntley, O Dudchenko, EK Stamenova, NC Durand, ...
Proceedings of the National Academy of Sciences 113 (31), E4504-E4512, 2016
The Juicebox Assembly Tools module facilitates de novo assembly of mammalian genomes with chromosome-length scaffolds for under $1000
O Dudchenko, MS Shamim, SS Batra, NC Durand, NT Musial, R Mostofa, ...
BioRxiv, 254797, 2018
3D genomics across the tree of life reveals condensin II as a determinant of architecture type
C Hoencamp, O Dudchenko, AMO Elbatsh, S Brahmachari, ...
Science 372 (6545), 984-989, 2021
Hybrid de novo genome assembly and centromere characterization of the gray mouse lemur (Microcebus murinus)
PA Larsen, RA Harris, Y Liu, SC Murali, CR Campbell, AD Brown, ...
BMC biology 15, 1-17, 2017
The gene-rich genome of the scallop Pecten maximus
NJ Kenny, SA McCarthy, O Dudchenko, K James, E Betteridge, C Corton, ...
GigaScience 9 (5), giaa037, 2020
Canfam_GSD: De novo chromosome-length genome assembly of the German Shepherd Dog (Canis lupus familiaris) using a combination of long reads, optical …
MA Field, BD Rosen, O Dudchenko, EKF Chan, AE Minoche, RJ Edwards, ...
GigaScience 9 (4), giaa027, 2020
Genome-wide diversity in the California condor tracks its prehistoric abundance and decline
JA Robinson, RCK Bowie, O Dudchenko, EL Aiden, SL Hendrickson, ...
Current Biology 31 (13), 2939-2946. e5, 2021
A rapid, low-cost, and highly sensitive SARS-CoV-2 diagnostic based on whole-genome sequencing
PA Adastra, NC Durand, N Mitra, SG Pulido, R Mahajan, A Blackburn, ...
BioRxiv, 2020.04. 25.061499, 2020
Mathematical modeling of intravascular blood coagulation under wall shear stress
OS Rukhlenko, OA Dudchenko, KE Zlobina, GT Guria
PloS one 10 (7), e0134028, 2015
Method for in situ determination of nucleic acid proximity
E Lieberman-aiden, S Rao, E Stamenova, O Dudchenko, E Lander
US Patent 11,279,974, 2022
Improved Aedes aegypti mosquito reference genome assembly enables biological discovery and vector control
BJ Matthews, O Dudchenko, S Kingan, S Koren, I Antoshechkin, ...
BioRxiv, 240747, 2017
Chromosomal‐level genome assembly of the scimitar‐horned oryx: Insights into diversity and demography of a species extinct in the wild
E Humble, P Dobrynin, H Senn, J Chuven, AF Scott, DW Mohr, ...
Molecular ecology resources 20 (6), 1668-1681, 2020
Chromosome-length genome assembly and structural variations of the primal Basenji dog (Canis lupus familiaris) genome
RJ Edwards, MA Field, JM Ferguson, O Dudchenko, J Keilwagen, ...
BMC genomics 22 (1), 1-19, 2021
Fine-mapping of nuclear compartments using ultra-deep Hi-C shows that active promoter and enhancer elements localize in the active A compartment even when adjacent sequences do not
H Gu, H Harris, M Olshansky, Y Eliaz, A Krishna, A Kalluchi, M Jacobs, ...
BioRxiv, 2021.10. 03.462599, 2021
High-quality reference genome for Clonorchis sinensis
ND Young, AJ Stroehlein, L Kinkar, T Wang, WM Sohn, BCH Chang, ...
Genomics 113 (3), 1605-1615, 2021
Chromosome-length genome assemblies of six legume species provide insights into genome organization, evolution, and agronomic traits for crop improvement
V Garg, O Dudchenko, J Wang, AW Khan, S Gupta, P Kaur, K Han, ...
Journal of Advanced Research 42, 315-329, 2022
Chromosome-level genome of Schistosoma haematobium underpins genome-wide explorations of molecular variation
AJ Stroehlein, PK Korhonen, VV Lee, SA Ralph, M Mentink-Kane, H You, ...
PLoS pathogens 18 (2), e1010288, 2022
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