Ruchi Chaudhary
Ruchi Chaudhary
Principal Scientist, Computational Biology at Janssen Research and Development
Verified email at
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Synthesis of phylogeny and taxonomy into a comprehensive tree of life
CE Hinchliff, SA Smith, JF Allman, JG Burleigh, R Chaudhary, LM Coghill, ...
Proceedings of the National Academy of Sciences (PNAS) 112 (41), 12764-12769, 2015
Establishing guidelines to harmonize tumor mutational burden (TMB): in silico assessment of variation in TMB quantification across diagnostic platforms: phase I of the Friends …
DM Merino, LM McShane, D Fabrizio, V Funari, SJ Chen, JR White, ...
Journal for immunotherapy of cancer 8 (1), 2020
iGTP: a software package for large-scale gene tree parsimony analysis
R Chaudhary, MS Bansal, A Wehe, D Fernández-Baca, O Eulenstein
BMC bioinformatics 11, 1-7, 2010
Inferring species trees from incongruent multi-copy gene trees using the Robinson-Foulds distance
R Chaudhary, JG Burleigh, D Fernandez-Baca
Algorithms for Molecular Biology 8, 28, 2013
MulRF: a software package for phylogenetic analysis using multi-copy gene trees
R Chaudhary, D Fernández-Baca, JG Burleigh
Bioinformatics 31 (3), 432-433, 2015
A scalable solution for tumor mutational burden from formalin-fixed, paraffin-embedded samples using the Oncomine Tumor Mutation Load Assay
R Chaudhary, L Quagliata, JP Martin, I Alborelli, D Cyanam, V Mittal, ...
Translational lung cancer research 7 (6), 616, 2018
Efficient error correction algorithms for gene tree reconciliation based on duplication, duplication and loss, and deep coalescence
R Chaudhary, JG Burleigh, O Eulenstein
BMC bioinformatics 13, 1-10, 2012
Fast local search for unrooted Robinson-Foulds supertrees
R Chaudhary, JG Burleigh, D Fernández-Baca
IEEE/ACM Transactions on Computational Biology and Bioinformatics 9 (4 …, 2012
Assessing approaches for inferring species trees from multi-copy genes
R Chaudhary, B Boussau, JG Burleigh, D Fernández-Baca
Systematic Biology 64 (2), 325-339, 2015
South Asian medical cohorts reveal strong founder effects and high rates of homozygosity
JD Wall, JF Sathirapongsasuti, R Gupta, A Rasheed, R Venkatesan, ...
Nature communications 14 (1), 3377, 2023
Laughinghouse, 4th
CE Hinchliff, SA Smith, JF Allman, JG Burleigh, R Chaudhary, LM Coghill, ...
HD, McTavish, EJ, Midford, PE, Owen, CL, Ree, RH, Rees, JA, Soltis, DE …, 2015
Algorithms for rapid error correction for the gene duplication problem
R Chaudhary, JG Burleigh, O Eulenstein
Bioinformatics Research and Applications: 7th International Symposium, ISBRA …, 2011
Genome‐Wide Polygenic Score Predicts Large Number of High Risk Individuals in Monogenic Undiagnosed Young Onset Parkinson's Disease Patients from India
PL Kukkle, TS Geetha, R Chaudhary, JF Sathirapongsasuti, V Goyal, ...
Advanced Biology 6 (11), 2101326, 2022
Validation of a Targeted Next-Generation Sequencing Panel for Tumor Mutation Burden Analysis: Results from the Onconetwork Immuno-Oncology Consortium
F Fenizia, I Alborelli, JL Costa, C Vollbrecht, B Bellosillo, W Dinjens, ...
The Journal of Molecular Diagnostics 23 (7), 882-893, 2021
Constructing and Employing Tree Alignment Graphs for Phylogenetic Synthesis
R Chaudhary, D Fernandez-Baca, JG Burleigh
Algorithms for Computational Biology 9199, 97-108, 2015
Methods for detecting mutation load from a tumor sample
FH Ruchi Chaudhary
US Patent 11,101,019, 2021
Algorithms for constructing more accurate and inclusive phylogenetic trees
R Chaudhary
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