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Ruchi Chaudhary
Ruchi Chaudhary
Principal Scientist, Computational Biology at Janssen Research and Development
Verified email at its.jnj.com
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Cited by
Cited by
Year
Synthesis of phylogeny and taxonomy into a comprehensive tree of life
CE Hinchliff, SA Smith, JF Allman, JG Burleigh, R Chaudhary, LM Coghill, ...
Proceedings of the National Academy of Sciences (PNAS) 112 (41), 12764-12769, 2015
7192015
Establishing guidelines to harmonize tumor mutational burden (TMB): in silico assessment of variation in TMB quantification across diagnostic platforms: phase I of the Friends …
DM Merino, LM McShane, D Fabrizio, V Funari, SJ Chen, JR White, ...
Journal for immunotherapy of cancer 8 (1), 2020
3832020
iGTP: a software package for large-scale gene tree parsimony analysis
R Chaudhary, MS Bansal, A Wehe, D Fernández-Baca, O Eulenstein
BMC bioinformatics 11, 1-7, 2010
1022010
Inferring species trees from incongruent multi-copy gene trees using the Robinson-Foulds distance
R Chaudhary, JG Burleigh, D Fernandez-Baca
Algorithms for Molecular Biology 8, 28, 2013
482013
MulRF: a software package for phylogenetic analysis using multi-copy gene trees
R Chaudhary, D Fernández-Baca, JG Burleigh
Bioinformatics 31 (3), 432-433, 2015
432015
A scalable solution for tumor mutational burden from formalin-fixed, paraffin-embedded samples using the Oncomine Tumor Mutation Load Assay
R Chaudhary, L Quagliata, JP Martin, I Alborelli, D Cyanam, V Mittal, ...
Translational lung cancer research 7 (6), 616, 2018
422018
Efficient error correction algorithms for gene tree reconciliation based on duplication, duplication and loss, and deep coalescence
R Chaudhary, JG Burleigh, O Eulenstein
BMC bioinformatics 13, 1-10, 2012
332012
Fast local search for unrooted Robinson-Foulds supertrees
R Chaudhary, JG Burleigh, D Fernández-Baca
IEEE/ACM Transactions on Computational Biology and Bioinformatics 9 (4 …, 2012
302012
Assessing approaches for inferring species trees from multi-copy genes
R Chaudhary, B Boussau, JG Burleigh, D Fernández-Baca
Systematic Biology 64 (2), 325-339, 2015
192015
South Asian medical cohorts reveal strong founder effects and high rates of homozygosity
JD Wall, JF Sathirapongsasuti, R Gupta, A Rasheed, R Venkatesan, ...
Nature communications 14 (1), 3377, 2023
132023
Laughinghouse, 4th
CE Hinchliff, SA Smith, JF Allman, JG Burleigh, R Chaudhary, LM Coghill, ...
HD, McTavish, EJ, Midford, PE, Owen, CL, Ree, RH, Rees, JA, Soltis, DE …, 2015
92015
Algorithms for rapid error correction for the gene duplication problem
R Chaudhary, JG Burleigh, O Eulenstein
Bioinformatics Research and Applications: 7th International Symposium, ISBRA …, 2011
72011
Genome‐Wide Polygenic Score Predicts Large Number of High Risk Individuals in Monogenic Undiagnosed Young Onset Parkinson's Disease Patients from India
PL Kukkle, TS Geetha, R Chaudhary, JF Sathirapongsasuti, V Goyal, ...
Advanced Biology 6 (11), 2101326, 2022
32022
Validation of a Targeted Next-Generation Sequencing Panel for Tumor Mutation Burden Analysis: Results from the Onconetwork Immuno-Oncology Consortium
F Fenizia, I Alborelli, JL Costa, C Vollbrecht, B Bellosillo, W Dinjens, ...
The Journal of Molecular Diagnostics 23 (7), 882-893, 2021
32021
Constructing and Employing Tree Alignment Graphs for Phylogenetic Synthesis
R Chaudhary, D Fernandez-Baca, JG Burleigh
Algorithms for Computational Biology 9199, 97-108, 2015
12015
Methods for detecting mutation load from a tumor sample
FH Ruchi Chaudhary
US Patent 11,101,019, 2021
2021
Algorithms for constructing more accurate and inclusive phylogenetic trees
R Chaudhary
2013
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