Minimum information about a microarray experiment (MIAME)—toward standards for microarray data A Brazma, P Hingamp, J Quackenbush, G Sherlock, P Spellman, ... Nature genetics 29 (4), 365-371, 2001 | 4965 | 2001 |
ArrayExpress—a public repository for microarray gene expression data at the EBI A Brazma, H Parkinson, U Sarkans, M Shojatalab, J Vilo, ... Nucleic acids research 31 (1), 68-71, 2003 | 1137 | 2003 |
ArrayExpress—a public database of microarray experiments and gene expression profiles H Parkinson, M Kapushesky, M Shojatalab, N Abeygunawardena, ... Nucleic acids research 35 (suppl_1), D747-D750, 2007 | 840 | 2007 |
ArrayExpress update—simplifying data submissions N Kolesnikov, E Hastings, M Keays, O Melnichuk, YA Tang, E Williams, ... Nucleic acids research 43 (D1), D1113-D1116, 2015 | 828 | 2015 |
The HUPO PSI's molecular interaction format—a community standard for the representation of protein interaction data H Hermjakob, L Montecchi-Palazzi, G Bader, J Wojcik, L Salwinski, ... Nature biotechnology 22 (2), 177-183, 2004 | 764 | 2004 |
Design and implementation of microarray gene expression markup language (MAGE-ML) PT Spellman, M Miller, J Stewart, C Troup, U Sarkans, S Chervitz, ... Genome biology 3, 1-9, 2002 | 600 | 2002 |
ArrayExpress update–from bulk to single-cell expression data A Athar, A Füllgrabe, N George, H Iqbal, L Huerta, A Ali, C Snow, ... Nucleic acids research 47 (D1), D711-D715, 2019 | 578 | 2019 |
ArrayExpress update—from an archive of functional genomics experiments to the atlas of gene expression H Parkinson, M Kapushesky, N Kolesnikov, G Rustici, M Shojatalab, ... Nucleic acids research 37 (suppl_1), D868-D872, 2009 | 512 | 2009 |
ArrayExpress—a public repository for microarray gene expression data at the EBI H Parkinson, U Sarkans, M Shojatalab, N Abeygunawardena, S Contrino, ... Nucleic acids research 33 (suppl_1), D553-D555, 2005 | 474 | 2005 |
ArrayExpress update—trends in database growth and links to data analysis tools G Rustici, N Kolesnikov, M Brandizi, T Burdett, M Dylag, I Emam, A Farne, ... Nucleic acids research 41 (D1), D987-D990, 2012 | 433 | 2012 |
ArrayExpress update—an archive of microarray and high-throughput sequencing-based functional genomics experiments H Parkinson, U Sarkans, N Kolesnikov, N Abeygunawardena, T Burdett, ... Nucleic acids research 39 (suppl_1), D1002-D1004, 2010 | 391 | 2010 |
Image Data Resource: a bioimage data integration and publication platform E Williams, J Moore, SW Li, G Rustici, A Tarkowska, A Chessel, S Leo, ... Nature methods 14 (8), 775-781, 2017 | 278 | 2017 |
A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB TF Rayner, P Rocca-Serra, PT Spellman, HC Causton, A Farne, ... BMC bioinformatics 7, 1-18, 2006 | 271 | 2006 |
Biomarkers in autism spectrum disorder: the old and the new B Ruggeri, U Sarkans, G Schumann, AM Persico Psychopharmacology 231, 1201-1216, 2014 | 224 | 2014 |
Standards for systems biology A Brazma, M Krestyaninova, U Sarkans Nature Reviews Genetics 7 (8), 593-605, 2006 | 186 | 2006 |
Discovering and linking public omics data sets using the Omics Discovery Index Y Perez-Riverol, M Bai, F da Veiga Leprevost, S Squizzato, YM Park, ... Nature biotechnology 35 (5), 406-409, 2017 | 182 | 2017 |
Human metabolic profiles are stably controlled by genetic and environmental variation G Nicholson, M Rantalainen, AD Maher, JV Li, D Malmodin, KR Ahmadi, ... Molecular systems biology 7 (1), 525, 2011 | 173 | 2011 |
Expression Profiler: next generation—an online platform for analysis of microarray data M Kapushesky, P Kemmeren, AC Culhane, S Durinck, J Ihmels, C Körner, ... Nucleic acids research 32 (suppl_2), W465-W470, 2004 | 157 | 2004 |
A genome-wide metabolic QTL analysis in Europeans implicates two loci shaped by recent positive selection G Nicholson, M Rantalainen, JV Li, AD Maher, D Malmodin, KR Ahmadi, ... PLoS genetics 7 (9), e1002270, 2011 | 142 | 2011 |
The BioStudies database—one stop shop for all data supporting a life sciences study U Sarkans, M Gostev, A Athar, E Behrangi, O Melnichuk, A Ali, J Minguet, ... Nucleic acids research 46 (D1), D1266-D1270, 2018 | 138 | 2018 |