| Inferring the mutational history of a tumor using multi-state perfect phylogeny mixtures M El-Kebir, G Satas, L Oesper, BJ Raphael Cell systems 3 (1), 43-53, 2016 | 151 | 2016 |
| Quantifying tumor heterogeneity in whole-genome and whole-exome sequencing data L Oesper, G Satas, BJ Raphael Bioinformatics 30 (24), 3532-3540, 2014 | 125 | 2014 |
| Inferring parsimonious migration histories for metastatic cancers M El-Kebir, G Satas, BJ Raphael Nature Genetics 50, 718–726, 2018 | 118 | 2018 |
| SCARLET: single-cell tumor phylogeny inference with copy-number constrained mutation losses G Satas, S Zaccaria, G Mon, BJ Raphael Cell systems 10 (4), 323-332. e8, 2020 | 74 | 2020 |
| Tumor phylogeny inference using tree-constrained importance sampling G Satas, BJ Raphael Bioinformatics 33 (14), i152-i160, 2017 | 54 | 2017 |
| The clonal evolution of metastatic osteosarcoma as shaped by cisplatin treatment SW Brady, X Ma, A Bahrami, G Satas, G Wu, S Newman, M Rusch, ... Molecular Cancer Research 17 (4), 895-906, 2019 | 52 | 2019 |
| CALDER: inferring phylogenetic trees from longitudinal tumor samples MA Myers, G Satas, BJ Raphael Cell systems 8 (6), 514-522. e5, 2019 | 50 | 2019 |
| DeCiFering the elusive cancer cell fraction in tumor heterogeneity and evolution G Satas, S Zaccaria, M El-Kebir, BJ Raphael Cell Systems 12 (10), 1004-1018, 2021 | 23 | 2021 |
| Haplotype phasing in single-cell DNA-sequencing data G Satas, BJ Raphael Bioinformatics 34 (13), i211-i217, 2018 | 15 | 2018 |
| Allele-specific transcriptional effects of subclonal copy number alterations enable genotype-phenotype mapping in cancer cells H Shi, MJ Williams, G Satas, AC Weiner, A McPherson, SP Shah Nature Communications 15 (1), 2482, 2024 | 7 | 2024 |
| Ongoing genome doubling promotes evolvability and immune dysregulation in ovarian cancer AW McPherson, I Vazquez-Garcia, MA Myers, M Zatzman, DH Al-Rawi, ... bioRxiv, 2024.07. 11.602772, 2024 | 2 | 2024 |
| Exploiting allele-specific transcriptional effects of subclonal copy number alterations for genotype-phenotype mapping in cancer cell populations H Shi, MJ Williams, G Satas, AC Weiner, A McPherson, SP Shah bioRxiv, 2023 | 2 | 2023 |
| Tracking clonal evolution of drug resistance in ovarian cancer patients by exploiting structural variants in cfDNA MJ Williams, I Vázquez-García, G Tam, M Wu, N Varice, E Havasov, H Shi, ... bioRxiv, 2024 | 1 | 2024 |
| OA-26 Single Cell Whole Genome Measurement of Genomic Heterogeneity and Clonal Evolution in Multiple Myeloma A McPherson, K Maclachlan, M Myers, G Satas, JJ Garcés, H Lee, ... Clinical Lymphoma Myeloma and Leukemia 24, S17, 2024 | | 2024 |
| Abstract PR012: Evolutionary dynamics of whole-genome doubling in ovarian cancer I Vázquez-García, M Myers, MJ Williams, SS Freeman, J Li, H Shi, ... Cancer Research 84 (3_Supplement_2), PR012-PR012, 2024 | | 2024 |
| Single Cell Whole Genome Measurement of Genomic Heterogeneity and Clonal Evolution in Multiple Myeloma A McPherson, KH Maclachlan, M Myers, G Satas, O Landgren, SZ Usmani, ... Blood 142, 4722, 2023 | | 2023 |
| Phylogeny tree generation from mixed samples BJ Raphael, M El-Kebir, G Satas US Patent App. 15/858,333, 2018 | | 2018 |
Ben RaphaelProfessor of Computer Science, Princeton UniversityVerified email at princeton.edu
