Pi-Chuan Chang
Pi-Chuan Chang
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Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome
AM Wenger, P Peluso, WJ Rowell, PC Chang, RJ Hall, GT Concepcion, ...
Nature biotechnology 37 (10), 1155-1162, 2019
A universal SNP and small-indel variant caller using deep neural networks
R Poplin, PC Chang, D Alexander, S Schwartz, T Colthurst, A Ku, ...
Nature biotechnology 36 (10), 983-987, 2018
A conditional random field word segmenter for sighan bakeoff 2005
H Tseng, PC Chang, G Andrew, D Jurafsky, CD Manning
Proceedings of the fourth SIGHAN workshop on Chinese language Processing, 2005
Optimizing Chinese word segmentation for machine translation performance
PC Chang, M Galley, CD Manning
Proceedings of the third workshop on statistical machine translation, 224-232, 2008
A draft human pangenome reference
WW Liao, M Asri, J Ebler, D Doerr, M Haukness, G Hickey, S Lu, JK Lucas, ...
Nature 617 (7960), 312-324, 2023
Discriminative reordering with Chinese grammatical relations features
PC Chang, H Tseng, D Jurafsky, CD Manning
Proceedings of the Third Workshop on Syntax and Structure in Statistical …, 2009
Pangenomics enables genotyping of known structural variants in 5202 diverse genomes
J Sirén, J Monlong, X Chang, AM Novak, JM Eizenga, C Markello, ...
Science 374 (6574), abg8871, 2021
Haplotype-aware variant calling with PEPPER-Margin-DeepVariant enables high accuracy in nanopore long-reads
K Shafin, T Pesout, PC Chang, M Nattestad, A Kolesnikov, S Goel, G Baid, ...
Nature methods 18 (11), 1322-1332, 2021
Ultrarapid nanopore genome sequencing in a critical care setting
JE Gorzynski, SD Goenka, K Shafin, TD Jensen, DG Fisk, ME Grove, ...
New England Journal of Medicine 386 (7), 700-702, 2022
Towards generalist biomedical AI
T Tu, S Azizi, D Driess, M Schaekermann, M Amin, PC Chang, A Carroll, ...
NEJM AI 1 (3), AIoa2300138, 2024
Accurate, scalable cohort variant calls using DeepVariant and GLnexus
T Yun, H Li, PC Chang, MF Lin, A Carroll, CY McLean
Bioinformatics 36 (24), 5582-5589, 2020
PrecisionFDA Truth Challenge V2: Calling variants from short and long reads in difficult-to-map regions
ND Olson, J Wagner, J McDaniel, SH Stephens, ST Westreich, ...
Cell genomics 2 (5), 2022
Uptraining for accurate deterministic question parsing
S Petrov, PC Chang, M Ringgaard, H Alshawi
Proceedings of the 2010 Conference on Empirical Methods in Natural Language …, 2010
Deep learning of genomic variation and regulatory network data
A Telenti, C Lippert, PC Chang, M DePristo
Human molecular genetics 27 (Supplement_R1), R63-R71, 2018
DeepConsensus improves the accuracy of sequences with a gap-aware sequence transformer
G Baid, DE Cook, K Shafin, T Yun, F Llinares-López, Q Berthet, ...
Nature Biotechnology 41 (2), 232-238, 2023
A deep learning approach to pattern recognition for short DNA sequences
A Busia, GE Dahl, C Fannjiang, DH Alexander, E Dorfman, R Poplin, ...
BioRxiv, 353474, 2018
Accelerated identification of disease-causing variants with ultra-rapid nanopore genome sequencing
SD Goenka, JE Gorzynski, K Shafin, DG Fisk, T Pesout, TD Jensen, ...
Nature Biotechnology 40 (7), 1035-1041, 2022
A discriminative syntactic word order model for machine translation
PC Chang, K Toutanova
Proceedings of the 45th Annual Meeting of the Association of Computational …, 2007
Disambiguating “DE” for Chinese-English machine translation
PC Chang, D Jurafsky, CD Manning
Proceedings of the Fourth Workshop on Statistical Machine Translation, 215-223, 2009
Haplotype-aware variant calling enables high accuracy in nanopore long-reads using deep neural networks
K Shafin, T Pesout, PC Chang, M Nattestad, A Kolesnikov, S Goel, G Baid, ...
BioRxiv, 2021.03. 04.433952, 2021
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