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Cong Ma
Cong Ma
Assistant Professor, University of Michigan
Verified email at umich.edu
Title
Cited by
Cited by
Year
Spatial epigenome–transcriptome co-profiling of mammalian tissues
D Zhang, Y Deng, P Kukanja, E Agirre, M Bartosovic, M Dong, C Ma, S Ma, ...
Nature 616 (7955), 113-122, 2023
1502023
Epigenetic regulation during cancer transitions across 11 tumour types
NV Terekhanova, A Karpova, WW Liang, A Strzalkowski, S Chen, Y Li, ...
Nature 623 (7986), 432-441, 2023
392023
SQUID: transcriptomic structural variation detection from RNA-seq
C Ma, M Shao, C Kingsford
Genome biology 19 (1), 52, 2018
302018
Exact transcript quantification over splice graphs
C Ma, H Zheng, C Kingsford
Algorithms for Molecular Biology 16 (1), 5, 2021
152021
Deriving ranges of optimal estimated transcript expression due to nonidentifiability
H Zheng, C Ma, C Kingsford
Journal of Computational Biology 29 (2), 121-139, 2022
142022
Network motifs modulate druggability of cellular targets
F Wu, C Ma, C Tan
Scientific reports 6 (1), 36626, 2016
122016
Belayer: Modeling discrete and continuous spatial variation in gene expression from spatially resolved transcriptomics
C Ma, U Chitra, S Zhang, B Raphael
Cell Systems 13 (10), 786-797, 2022
112022
Detecting, categorizing, and correcting coverage anomalies of RNA-seq quantification
C Ma, C Kingsford
Cell systems 9 (6), 589-599. e7, 2019
102019
Mapping the topography of spatial gene expression with interpretable deep learning
U Chitra, BJ Arnold, H Sarkar, C Ma, S Lopez-Darwin, K Sanno, ...
International Conference on Research in Computational Molecular Biology, 368-371, 2024
62024
Finding ranges of optimal transcript expression quantification in cases of non-identifiability
C Ma, H Zheng, C Kingsford
Biorxiv, 2020
62020
Detecting transcriptomic structural variants in heterogeneous contexts via the Multiple Compatible Arrangements Problem
Y Qiu, C Ma, H Xie, C Kingsford
Algorithms for Molecular Biology 15 (1), 9, 2020
32020
Detecting anomalies in RNA-seq quantification
C Ma, C Kingsford
bioRxiv, 541714, 2019
22019
Estimating mutual information under measurement error
C Ma, C Kingsford
bioRxiv, 852384, 2019
2019
SQUID: Transcriptomic Structural Variation Detection from
C Ma, M Shao, C Kingsford
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