| A deep generative model for molecule optimization via one fragment modification Z Chen, MR Min, S Parthasarathy, X Ning Nature Machine Intelligence, 2021 | 78 | 2021 |
| Llasmol: Advancing large language models for chemistry with a large-scale, comprehensive, high-quality instruction tuning dataset B Yu, FN Baker, Z Chen, X Ning, H Sun First Conference on Language Modeling, 2024 | 38 | 2024 |
| G2Retro as a two-step graph generative models for retrosynthesis prediction Z Chen, OR Ayinde, JR Fuchs, H Sun, X Ning Communications Chemistry 6, 102, 2023 | 38 | 2023 |
| A knowledge graph of clinical trials (CTKG) Z Chen, B Peng, VN Ioannidis, M Li, G Karypis, X Ning Scientific Reports 12 (1), 1-14, 2022 | 24* | 2022 |
| Ranking-based convolutional neural network models for peptide-MHC class I binding prediction Z Chen, MR Min, X Ning Frontiers in molecular biosciences 8, 634836, 2021 | 12 | 2021 |
| Shape-conditioned 3D Molecule Generation via Equivariant Diffusion Models Z Chen, B Peng, S Parthasarathy, X Ning NeurIPS 2023 Generative AI and Biology (GenBio) Workshop, 2023 | 11 | 2023 |
| Binding peptide generation for MHC Class I proteins with deep reinforcement learning Z Chen, B Zhang, H Guo, P Emani, T Clancy, C Jiang, M Gerstein, X Ning, ... Bioinformatics 39 (2), btad055, 2023 | 10 | 2023 |
| Towards efficient and effective adaptation of large language models for sequential recommendation B Peng, B Burns, Z Chen, S Parthasarathy, X Ning arXiv preprint arXiv:2310.01612, 2023 | 7 | 2023 |
| Development of complemented comprehensive networks for rapid screening of repurposable drugs applicable to new emerging disease outbreaks Y Nam, JS Yun, SM Lee, JW Park, Z Chen, B Lee, A Verma, X Ning, ... Journal of Translational Medicine 21, 415, 2023 | 6* | 2023 |
| T-Cell Receptor Optimization with Reinforcement Learning and Mutation Polices for Precision Immunotherapy Z Chen, MR Min, H Guo, C Cheng, T Clancy, X Ning Research in Computational Molecular Biology: 27th Annual International …, 2023 | 6 | 2023 |
| Modeling sequences as star graphs to address over-smoothing in self-attentive sequential recommendation B Peng, Z Chen, S Parthasarathy, X Ning ACM Transactions on Knowledge Discovery from Data 18 (8), 1-24, 2024 | 4 | 2024 |
| RLSynC: Offline–Online Reinforcement Learning for Synthon Completion FN Baker, Z Chen, D Adu-Ampratwum, X Ning Journal of Chemical Information and Modeling 64 (17), 6723-6735, 2024 | 2 | 2024 |
| Generating 3D Binding Molecules Using Shape-Conditioned Diffusion Models with Guidance Z Chen, B Peng, T Zhai, D Adu-Ampratwum, X Ning arXiv preprint arXiv:2502.06027, 2025 | 1 | 2025 |
| DiffER: Categorical Diffusion Models for Chemical Retrosynthesis S Current, Z Chen, X Ning NeurIPS 2024 Workshop on AI for New Drug Modalities, 2024 | | 2024 |
| log-RRIM: Yield Prediction via Local-to-global Reaction Representation Learning and Interaction Modeling X Hu, Z Chen, B Peng, D Adu-Ampratwum, X Ning ArXiv, arXiv: 2411.03320 v3, 2024 | | 2024 |
| Binding peptide generation for mhc class i proteins with deep reinforcement learning R Min, HP Graf, Z Chen US Patent US20230085160A1, 2023 | | 2023 |
| Peptide search system for immunotherapy R Min, HP Graf, Z Chen US Patent US20230083313A1, 2023 | | 2023 |
Xia NingProfessor, Biomedical Informatics, Computer Science and Engineering, The Ohio StateVerified email at osu.edu
