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Frederik Otzen Bagger
Frederik Otzen Bagger
University of Cambridge and EMBL-EBI
Verified email at ebi.ac.uk
Title
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Cited by
Year
An atlas of active enhancers across human cell types and tissues
R Andersson, C Gebhard, I Miguel-Escalada, I Hoof, J Bornholdt, M Boyd, ...
Nature 507 (7493), 455-461, 2014
26402014
Classification of low quality cells from single-cell RNA-seq data
T Ilicic, JK Kim, AA Kolodziejczyk, FO Bagger, DJ McCarthy, JC Marioni, ...
Genome biology 17, 1-15, 2016
6652016
Genetic drivers of epigenetic and transcriptional variation in human immune cells
L Chen, B Ge, FP Casale, L Vasquez, T Kwan, D Garrido-Martín, S Watt, ...
Cell 167 (5), 1398-1414. e24, 2016
6572016
BloodSpot: a database of gene expression profiles and transcriptional programs for healthy and malignant haematopoiesis
FO Bagger, D Sasivarevic, SH Sohi, LG Laursen, S Pundhir, CK Sřnderby, ...
Nucleic acids research 44 (D1), D917-D924, 2016
3142016
Single-cell RNA-seq and computational analysis using temporal mixture modeling resolves TH1/TFH fate bifurcation in malaria
T Lönnberg, V Svensson, KR James, D Fernandez-Ruiz, I Sebina, ...
Science immunology 2 (9), eaal2192, 2017
2792017
Loss of TET2 in hematopoietic cells leads to DNA hypermethylation of active enhancers and induction of leukemogenesis
KD Rasmussen, G Jia, JV Johansen, MT Pedersen, N Rapin, FO Bagger, ...
Genes & development 29 (9), 910-922, 2015
2702015
BloodSpot: a database of healthy and malignant haematopoiesis updated with purified and single cell mRNA sequencing profiles
FO Bagger, S Kinalis, N Rapin
Nucleic acids research 47 (D1), D881-D885, 2019
2052019
Comparing cancer vs normal gene expression profiles identifies new disease entities and common transcriptional programs in AML patients
N Rapin, FO Bagger, J Jendholm, H Mora-Jensen, A Krogh, A Kohlmann, ...
Blood, The Journal of the American Society of Hematology 123 (6), 894-904, 2014
1642014
Genome-wide analysis of differential transcriptional and epigenetic variability across human immune cell types
S Ecker, L Chen, V Pancaldi, FO Bagger, JM Fernández, ...
Genome biology 18, 1-17, 2017
1162017
C/EBPα is required for long-term self-renewal and lineage priming of hematopoietic stem cells and for the maintenance of epigenetic configurations in multipotent progenitors
MS Hasemann, FKB Lauridsen, J Waage, JS Jakobsen, AK Frank, ...
PLoS genetics 10 (1), e1004079, 2014
1152014
shRNA screening identifies JMJD1C as being required for leukemia maintenance
P Sroczynska, VA Cruickshank, JP Bukowski, S Miyagi, FO Bagger, ...
Blood, The Journal of the American Society of Hematology 123 (12), 1870-1882, 2014
962014
Telomerase inhibition effectively targets mouse and human AML stem cells and delays relapse following chemotherapy
C Bruedigam, FO Bagger, FH Heidel, CP Kuhn, S Guignes, A Song, ...
Cell stem cell 15 (6), 775-790, 2014
902014
ERG promotes the maintenance of hematopoietic stem cells by restricting their differentiation
KJ Knudsen, M Rehn, MS Hasemann, N Rapin, FO Bagger, E Ohlsson, ...
Genes & development 29 (18), 1915-1929, 2015
882015
HemaExplorer: a database of mRNA expression profiles in normal and malignant haematopoiesis
FO Bagger, N Rapin, K Theilgaard-Mönch, B Kaczkowski, LA Thoren, ...
Nucleic acids research 41 (D1), D1034-D1039, 2013
862013
A gain-of-function p53-mutant oncogene promotes cell fate plasticity and myeloid leukemia through the pluripotency factor FOXH1
E Loizou, A Banito, G Livshits, YJ Ho, RP Koche, FJ Sánchez-Rivera, ...
Cancer discovery 9 (7), 962-979, 2019
692019
Identification and validation of 174 COVID-19 vaccine candidate epitopes reveals low performance of common epitope prediction tools
M Prachar, S Justesen, DB Steen-Jensen, S Thorgrimsen, E Jurgons, ...
Scientific reports 10 (1), 20465, 2020
602020
The splicing factor RBM25 controls MYC activity in acute myeloid leukemia
Y Ge, MB Schuster, S Pundhir, N Rapin, FO Bagger, N Sidiropoulos, ...
Nature communications 10 (1), 172, 2019
532019
SinaPlot: an enhanced chart for simple and truthful representation of single observations over multiple classes
N Sidiropoulos, SH Sohi, TL Pedersen, BT Porse, O Winther, N Rapin, ...
Journal of Computational and Graphical Statistics 27 (3), 673-676, 2018
532018
A comparison of tools for copy-number variation detection in germline whole exome and whole genome sequencing data
M Gabrielaite, MH Torp, MS Rasmussen, S Andreu-Sánchez, FG Vieira, ...
Cancers 13 (24), 6283, 2021
502021
Autophagy is required for stem cell mobilization by G-CSF
L Leveque-El Mouttie, T Vu, KE Lineburg, RD Kuns, FO Bagger, BE Teal, ...
Blood, The Journal of the American Society of Hematology 125 (19), 2933-2936, 2015
482015
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