| URDME: a modular framework for stochastic simulation of reaction-transport processes in complex geometries B Drawert, S Engblom, A Hellander BMC systems biology 6 (1), 76, 2012 | 168 | 2012 |
| The diffusive finite state projection algorithm for efficient simulation of the stochastic reaction-diffusion master equation B Drawert, MJ Lawson, L Petzold, M Khammash The Journal of chemical physics 132 (7), 074101, 2010 | 95 | 2010 |
| Spatial stochastic dynamics enable robust cell polarization MJ Lawson, B Drawert, M Khammash, L Petzold, TM Yi PLoS computational biology 9 (7), e1003139, 2013 | 72 | 2013 |
| Stochastic simulation service: bridging the gap between the computational expert and the biologist B Drawert, A Hellander, B Bales, D Banerjee, G Bellesia, BJ Daigle Jr, ... PLoS computational biology 12 (12), e1005220, 2016 | 68 | 2016 |
| GillesPy: a python package for stochastic model building and simulation JH Abel, B Drawert, A Hellander, LR Petzold IEEE life sciences letters 2 (3), 35-38, 2016 | 52 | 2016 |
| Macromolecular crowding regulates the gene expression profile by limiting diffusion M Golkaram, S Hellander, B Drawert, LR Petzold PLoS computational biology 12 (11), e1005122, 2016 | 36 | 2016 |
| Molns: A cloud platform for interactive, reproducible, and scalable spatial stochastic computational experiments in systems biology using pyurdme B Drawert, M Trogdon, S Toor, L Petzold, A Hellander SIAM Journal on Scientific Computing 38 (3), C179-C202, 2016 | 34 | 2016 |
| Mapscale: a cloud environment for scientific computing C Bunch, B Drawert, M Norman University of California, Computer Science Department, Tech. Rep, 2009 | 33 | 2009 |
| Local error estimates for adaptive simulation of the reaction–diffusion master equation via operator splitting A Hellander, MJ Lawson, B Drawert, L Petzold Journal of computational physics 266, 89-100, 2014 | 25 | 2014 |
| The effect of cell geometry on polarization in budding yeast M Trogdon, B Drawert, C Gomez, SP Banavar, TM Yi, O Campŕs, ... PLoS computational biology 14 (6), e1006241, 2018 | 22 | 2018 |
| Progressive arm muscle weakness in ALS follows the same sequence regardless of onset site: use of TOMS, a novel analytic method to track limb strength NJ Thakore, BJ Drawert, BR Lapin, EP Pioro Amyotrophic Lateral Sclerosis and Frontotemporal Degeneration 22 (5-6), 380-387, 2021 | 19 | 2021 |
| A framework for discrete stochastic simulation on 3D moving boundary domains B Drawert, S Hellander, M Trogdon, TM Yi, L Petzold The Journal of chemical physics 145 (18), 184113, 2016 | 19 | 2016 |
| Language and runtime support for automatic configuration and deployment of scientific computing software over cloud fabrics C Bunch, B Drawert, N Chohan, C Krintz, L Petzold, K Shams Journal of Grid Computing 10, 23-46, 2012 | 19 | 2012 |
| Using stochastic epidemiological models to evaluate conservation strategies for endangered amphibians B Drawert, M Griesemer, LR Petzold, CJ Briggs Journal of the Royal Society Interface 14 (133), 20170480, 2017 | 17 | 2017 |
| A hybrid smoothed dissipative particle dynamics (SDPD) spatial stochastic simulation algorithm (sSSA) for advection–diffusion–reaction problems B Drawert, B Jacob, Z Li, TM Yi, L Petzold Journal of computational physics 378, 1-17, 2019 | 15 | 2019 |
| Reducing complexity in management of escience computations PO Östberg, A Hellander, B Drawert, E Elmroth, S Holmgren, L Petzold 2012 12th IEEE/ACM International Symposium on Cluster, Cloud and Grid …, 2012 | 14 | 2012 |
| An arbitrary Lagrangian Eulerian smoothed particle hydrodynamics (ALE-SPH) method with a boundary volume fraction formulation for fluid-structure interaction B Jacob, B Drawert, TM Yi, L Petzold Engineering analysis with boundary elements 128, 274-289, 2021 | 12 | 2021 |
| Coordinating cell polarization and morphogenesis through mechanical feedback SP Banavar, M Trogdon, B Drawert, TM Yi, LR Petzold, O Campŕs PLoS computational biology 17 (1), e1007971, 2021 | 11 | 2021 |
| URDME 1.1: User’s manual B Drawert, S Engblom, A Hellander ArXiv e-prints, 2011 | 11 | 2011 |
| Cloudtracker: Using execution provenance to optimize the cost of cloud use G Douglas, B Drawert, C Krintz, R Wolski Economics of Grids, Clouds, Systems, and Services: 11th International …, 2014 | 10 | 2014 |
Linda PetzoldProfessor, University of California Santa BarbaraVerified email at cs.ucsb.edu
