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James P. Balhoff
James P. Balhoff
Renaissance Computing Institute (RENCI), University of North Carolina at Chapel Hill
Verified email at renci.org
Title
Cited by
Cited by
Year
The gene ontology resource: 20 years and still GOing strong
Gene Ontology Consortium
Nucleic acids research 47 (D1), D330-D338, 2019
39442019
The Gene Ontology resource: enriching a GOld mine
Nucleic acids research 49 (D1), D325-D334, 2021
29292021
Expansion of the Gene Ontology knowledgebase and resources
GO Consortium
Nucleic Acids Research 45 (D1), D331-D338, 2017
1827*2017
The evolution of transcriptional regulation in eukaryotes
GA Wray, MW Hahn, E Abouheif, JP Balhoff, M Pizer, MV Rockman, ...
Molecular biology and evolution 20 (9), 1377-1419, 2003
14432003
The gene ontology knowledgebase in 2023
SA Aleksander, J Balhoff, S Carbon, JM Cherry, HJ Drabkin, D Ebert, ...
Genetics 224 (1), iyad031, 2023
9162023
Expansion of the Human Phenotype Ontology (HPO) knowledge base and resources
S Köhler, L Carmody, N Vasilevsky, JOB Jacobsen, D Danis, JP Gourdine, ...
Nucleic acids research 47 (D1), D1018-D1027, 2019
7422019
The Monarch Initiative: an integrative data and analytic platform connecting phenotypes to genotypes across species
CJ Mungall, JA McMurry, S Köhler, JP Balhoff, C Borromeo, M Brush, ...
Nucleic acids research 45 (D1), D712-D722, 2017
3182017
The Monarch Initiative in 2019: an integrative data and analytic platform connecting phenotypes to genotypes across species
KA Shefchek, NL Harris, M Gargano, N Matentzoglu, D Unni, M Brush, ...
Nucleic acids research 48 (D1), D704-D715, 2020
2442020
Finding our way through phenotypes
AR Deans, SE Lewis, E Huala, SS Anzaldo, M Ashburner, JP Balhoff, ...
PLoS biology 13 (1), e1002033, 2015
2372015
Development and application of a phylogenomic toolkit: resolving the evolutionary history of Madagascar’s lemurs
JE Horvath, DW Weisrock, SL Embry, I Fiorentino, JP Balhoff, P Kappeler, ...
Genome Research 18 (3), 489-499, 2008
1992008
ROBOT: a tool for automating ontology workflows
RC Jackson, JP Balhoff, E Douglass, NL Harris, CJ Mungall, JA Overton
BMC bioinformatics 20, 1-10, 2019
1982019
OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies
R Jackson, N Matentzoglu, JA Overton, R Vita, JP Balhoff, PL Buttigieg, ...
Database 2021, baab069, 2021
1822021
Time to change how we describe biodiversity
AR Deans, MJ Yoder, JP Balhoff
Trends in ecology & evolution 27 (2), 78-84, 2012
1752012
Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon
MA Haendel, JP Balhoff, FB Bastian, DC Blackburn, JA Blake, Y Bradford, ...
Journal of biomedical semantics 5, 1-13, 2014
1562014
Gene Ontology Causal Activity Modeling (GO-CAM) moves beyond GO annotations to structured descriptions of biological functions and systems
PD Thomas, DP Hill, H Mi, D Osumi-Sutherland, K Van Auken, S Carbon, ...
Nature genetics 51 (10), 1429-1433, 2019
1162019
NeXML: rich, extensible, and verifiable representation of comparative data and metadata
RA Vos, JP Balhoff, JA Caravas, MT Holder, H Lapp, WP Maddison, ...
Systematic biology 61 (4), 675-689, 2012
1152012
Evolutionary characters, phenotypes and ontologies: curating data from the systematic biology literature
WM Dahdul, JP Balhoff, J Engeman, T Grande, EJ Hilton, C Kothari, ...
PLoS One 5 (5), e10708, 2010
1052010
The teleost anatomy ontology: anatomical representation for the genomics age
WM Dahdul, JG Lundberg, PE Midford, JP Balhoff, H Lapp, TJ Vision, ...
Systematic biology 59 (4), 369-383, 2010
1042010
Phenex: ontological annotation of phenotypic diversity
JP Balhoff, WM Dahdul, CR Kothari, H Lapp, JG Lundberg, P Mabee, ...
PloS one 5 (5), e10500, 2010
1042010
KG-COVID-19: a framework to produce customized knowledge graphs for COVID-19 response
JT Reese, D Unni, TJ Callahan, L Cappelletti, V Ravanmehr, S Carbon, ...
Patterns 2 (1), 2021
1002021
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