Riccardo Dondi
Cited by
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The haplotyping problem: an overview of computational models and solutions
P Bonizzoni, G Della Vedova, R Dondi, J Li
Journal of Computer Science and Technology 18, 675-688, 2003
Reconciling a gene tree to a species tree under the duplication cost model
P Bonizzoni, GD Vedova, R Dondi
Theoretical computer science 347 (1), 36-53, 2005
Stimulating knowledge discovery and sharing
A Agostini, S Albolino, G De Michelis, F De Paoli, R Dondi
Proceedings of the 2003 ACM International Conference on Supporting Group …, 2003
A novel method for signal transduction network inference from indirect experimental evidence
R Albert, B DasGupta, R Dondi, S Kachalo, E Sontag, A Zelikovsky, ...
Journal of Computational Biology 14 (7), 927-949, 2007
HapCol: accurate and memory-efficient haplotype assembly from long reads
Y Pirola, S Zaccaria, R Dondi, GW Klau, N Pisanti, P Bonizzoni
Bioinformatics 32 (11), 1610-1617, 2016
Exemplar longest common subsequence
P Bonizzoni, G Della Vedova, R Dondi, G Fertin, R Rizzi, S Vialette
IEEE/ACM Transactions on Computational Biology and Bioinformatics 4 (4), 535-543, 2007
Kernel methods: Support vector machines
I Zoppis, G Mauri, R Dondi
Encyclopedia of Bioinformatics and Computational Biology: ABC of …, 2019
On the approximation of correlation clustering and consensus clustering
P Bonizzoni, G Della Vedova, R Dondi, T Jiang
Journal of Computer and System Sciences 74 (5), 671-696, 2008
The link between orthology relations and gene trees: a correction perspective
M Lafond, R Dondi, N El-Mabrouk
Algorithms for Molecular Biology 11, 1-13, 2016
Complexity issues in vertex-colored graph pattern matching
R Dondi, G Fertin, S Vialette
Journal of Discrete Algorithms 9 (1), 82-99, 2011
On the minimum error correction problem for haplotype assembly in diploid and polyploid genomes
P Bonizzoni, R Dondi, GW Klau, Y Pirola, N Pisanti, S Zaccaria
Journal of Computational Biology 23 (9), 718-736, 2016
Variants of constrained longest common subsequence
P Bonizzoni, G Della Vedova, R Dondi, Y Pirola
Information Processing Letters 110 (20), 877-881, 2010
The binary perfect phylogeny with persistent characters
P Bonizzoni, C Braghin, R Dondi, G Trucco
Theoretical computer science 454, 51-63, 2012
Maximum motif problem in vertex-colored graphs
R Dondi, G Fertin, S Vialette
Annual Symposium on Combinatorial Pattern Matching, 221-235, 2009
Inferring (biological) signal transduction networks via transitive reductions of directed graphs
R Albert, B DasGupta, R Dondi, E Sontag
Algorithmica 51, 129-159, 2008
Correlation clustering and consensus clustering
P Bonizzoni, G Della Vedova, R Dondi, T Jiang
International Symposium on Algorithms and Computation, 226-235, 2005
Computational methods for resting-state EEG of patients with disorders of consciousness
S Corchs, G Chioma, R Dondi, F Gasparini, S Manzoni, ...
Frontiers in neuroscience 13, 807, 2019
On the parameterized complexity of the repetition free longest common subsequence problem
G Blin, P Bonizzoni, R Dondi, F Sikora
Information Processing Letters 112 (7), 272-276, 2012
Polytomy refinement for the correction of dubious duplications in gene trees
M Lafond, C Chauve, R Dondi, N El-Mabrouk
Bioinformatics 30 (17), i519-i526, 2014
Gene tree correction for reconciliation and species tree inference: complexity and algorithms
R Dondi, N El-Mabrouk, KM Swenson
Journal of Discrete Algorithms 25, 51-65, 2014
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