| Gut microbiota-derived tryptophan metabolites modulate inflammatory response in hepatocytes and macrophages S Krishnan, Y Ding, N Saedi, M Choi, GV Sridharan, DH Sherr, ... Cell reports 23 (4), 1099-1111, 2018 | 496 | 2018 |
| Interactions between gut microbiota and non-alcoholic liver disease: The role of microbiota-derived metabolites Y Ding, K Yanagi, C Cheng, RC Alaniz, K Lee, A Jayaraman Pharmacological research 141, 521-529, 2019 | 93 | 2019 |
| Maximizing CRISPRi efficacy and accessibility with dual-sgRNA libraries and optimal effectors JM Replogle, JL Bonnar, AN Pogson, CR Liem, NK Maier, Y Ding, ... Elife 11, e81856, 2022 | 30 | 2022 |
| Mathematical Modeling and Parameter Estimation of Intracellular Signaling Pathway: Application to LPS-induced NFκB Activation and TNFα Production in … D Lee, Y Ding, A Jayaraman, JS Kwon Processes 6 (3), 21, 2018 | 26 | 2018 |
| Embedding synthetic microvascular networks in poly (lactic acid) substrates with rounded cross-sections for cell culture applications JH Huang, J Kim, Y Ding, A Jayaraman, VM Ugaz PLoS One 8 (9), e73188, 2013 | 19 | 2013 |
| Gut microbiota-derived tryptophan metabolites modulate inflammatory response in hepatocytes and macrophages. Cell Rep. 2018; 23 (4): 1099–111 S Krishnan, Y Ding, N Saedi, M Choi, GV Sridharan, DH Sherr, ... | 8 | |
| Gut microbiota-derived tryptophan metabolites modulate inflammatory response in hepatocytes and macrophages. Cell Rep. 2018; 23: 1099–111 S Krishnan, Y Ding, N Saedi, M Choi, GV Sridharan, DH Sherr, ... | 6 | |
| Oral supplementation of gut microbial metabolite indole-3-acetate alleviates diet-induced steatosis and inflammation in mice Y Ding, K Yanagi, F Yang, E Callaway, C Cheng, ME Hensel, R Menon, ... Elife 12, RP87458, 2024 | 2 | 2024 |
| A metabolically engineered bacterium controls autoimmunity and inflammation by remodeling the pro-inflammatory microenvironment JK Das, F Guo, C Hunt, S Steinmeyer, JA Plocica, KS Kobayashi, Y Ding, ... Gut Microbes 14 (1), 2143222, 2022 | 1 | 2022 |
| Modeling inter-kingdom regulation of inflammatory signaling in human intestinal epithelial cells S Maiti, G Grivas, K Choi, W Dai, Y Ding, DP Acosta, J Hahn, ... Computers & chemical engineering 140, 106954, 2020 | 1 | 2020 |
| Microbiota Regulation of Pro-atherogenic Phagocytes− Separating Metabolic and Inflammatory Mechanisms. S Eshghjoo, Y Ding, C Hunt, A Jayaraman, RC Alaniz The Journal of Immunology 200 (1_Supplement), 108.20-108.20, 2018 | 1 | 2018 |
| Microbiota metabolites derived from tryptophan modulate macrophage inflammation and migration through AMP-activated protein kinase Y Ding, S Krishnan, RC Alaniz, K Lee, A Jayaraman The Journal of Immunology 200 (1_Supplement), 53.18-53.18, 2018 | 1 | 2018 |
| A metabolically engineered bacterial vaccine protects against arthritis in mice P de Figueiredo, F Guo, J Das, Y Ding, A Jayaraman, RC Alaniz, J Song The Journal of Immunology 206 (1_Supplement), 66.13-66.13, 2021 | | 2021 |
| Derivation of a Dynamic Model for Palmitate-induced NFκB Signaling Pathway through Systems Biology Approach D Lee, Y Ding, A Jayaraman, JSI Kwon 2020 American Control Conference (ACC), 5028-5033, 2020 | | 2020 |
| Integrative Analysis of Free Fatty Acid-Induced NFκB Activation in Macrophages: A Step Towards the Quantitative Understanding of Inflammation Induced By Obesity D Lee, Y Ding, A Jayaraman, J Kwon 2019 AIChE Annual Meeting, 2019 | | 2019 |
| Microbiota Derived Metabolites as Modulators of Inflammation in Non-alcoholic Fatty Liver Disease Y Ding | | 2019 |
| Integrative Approach to Extract the Single-cell Dynamics of LPS-inducedSignal Pathway through Flow Cytometry Measurements and Parameter Estimation D Lee, Y Ding, A Jayaraman, JSI Kwon 2018 Annual American Control Conference (ACC), 1975-1980, 2018 | | 2018 |
| Modeling LPS-Induced TNF-α Production in Macrophages D Lee, Y Ding, A Jayaraman, JSI Kwon 2017 AIChE Annual Meeting, 2017 | | 2017 |
| Microbiota metabolites derived from tryptophan modulate macrophage inflammation and migration in non-alcoholic fatty liver disease Y Ding, S Krishnan, K Lee, A Jayaraman The Journal of Immunology 198 (1_Supplement), 197.14-197.14, 2017 | | 2017 |
| Using metabolomics to identify gut microbiota-derived metabolites as host inflammation modulators K Lee, S Krishnan, M Choi, Y Ding, N Saedi, A Jayaraman, ML Yarmush 11th Metabolic Engineering Conference 2016, 177-178, 2016 | | 2016 |
