| PHENIX: a comprehensive Python-based system for macromolecular structure solution PD Adams, PV Afonine, G Bunkóczi, VB Chen, IW Davis, N Echols, ... Acta Crystallographica Section D: Biological Crystallography 66 (2), 213-221, 2010 | 24121 | 2010 |
| Phaser crystallographic software AJ McCoy, RW Grosse-Kunstleve, PD Adams, MD Winn, LC Storoni, ... Journal of applied crystallography 40 (4), 658-674, 2007 | 21295 | 2007 |
| Crystallography & NMR system: A new software suite for macromolecular structure determination AT Brünger, PD Adams, GM Clore, WL DeLano, P Gros, ... Biological Crystallography 54 (5), 905-921, 1998 | 20687 | 1998 |
| Towards automated crystallographic structure refinement with phenix. refine PV Afonine, RW Grosse-Kunstleve, N Echols, JJ Headd, NW Moriarty, ... Acta Crystallographica Section D: Biological Crystallography 68 (4), 352-367, 2012 | 5361 | 2012 |
| PHENIX: building new software for automated crystallographic structure determination PD Adams, RW Grosse-Kunstleve, LW Hung, TR Ioerger, AJ McCoy, ... Acta Crystallographica Section D: Biological Crystallography 58 (11), 1948-1954, 2002 | 4903 | 2002 |
| Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix D Liebschner, PV Afonine, ML Baker, G Bunkóczi, VB Chen, TI Croll, ... Acta Crystallographica Section D: Structural Biology 75 (10), 861-877, 2019 | 4891 | 2019 |
| Accurate prediction of protein structures and interactions using a three-track neural network M Baek, F DiMaio, I Anishchenko, J Dauparas, S Ovchinnikov, GR Lee, ... Science 373 (6557), 871-876, 2021 | 4010 | 2021 |
| MolProbity: more and better reference data for improved all‐atom structure validation CJ Williams, JJ Headd, NW Moriarty, MG Prisant, LL Videau, LN Deis, ... Protein Science 27 (1), 293-315, 2018 | 3302 | 2018 |
| Real-space refinement in PHENIX for cryo-EM and crystallography PV Afonine, BK Poon, RJ Read, OV Sobolev, TC Terwilliger, ... Acta Crystallographica Section D: Structural Biology 74 (6), 531-544, 2018 | 2300 | 2018 |
| Iterative model building, structure refinement and density modification with the PHENIX AutoBuild wizard TC Terwilliger, RW Grosse-Kunstleve, PV Afonine, NW Moriarty, PH Zwart, ... Acta Crystallographica Section D: Biological Crystallography 64 (1), 61-69, 2008 | 1632 | 2008 |
| Structural basis for double-stranded RNA processing by Dicer IJ MacRae, K Zhou, F Li, A Repic, AN Brooks, WZ Cande, PD Adams, ... Science 311 (5758), 195-198, 2006 | 1329 | 2006 |
| electronic Ligand Builder and Optimization Workbench (eLBOW): a tool for ligand coordinate and restraint generation NW Moriarty, RW Grosse-Kunstleve, PD Adams Acta Crystallographica Section D: Biological Crystallography 65 (10), 1074-1080, 2009 | 1292 | 2009 |
| Decision-making in structure solution using Bayesian estimates of map quality: the PHENIX AutoSol wizard TC Terwilliger, PD Adams, RJ Read, AJ McCoy, NW Moriarty, ... Acta Crystallographica Section D: Biological Crystallography 65 (6), 582-601, 2009 | 931 | 2009 |
| The Phenix software for automated determination of macromolecular structures PD Adams, PV Afonine, G Bunkóczi, VB Chen, N Echols, JJ Headd, ... Methods 55 (1), 94-106, 2011 | 880 | 2011 |
| EMRinger: side chain–directed model and map validation for 3D cryo-electron microscopy BA Barad, N Echols, RYR Wang, Y Cheng, F DiMaio, PD Adams, ... Nature methods 12 (10), 943-946, 2015 | 777 | 2015 |
| New tools for the analysis and validation of cryo-EM maps and atomic models PV Afonine, BP Klaholz, NW Moriarty, BK Poon, OV Sobolev, ... Acta Crystallographica Section D: Structural Biology 74 (9), 814-840, 2018 | 636 | 2018 |
| Polder maps: improving OMIT maps by excluding bulk solvent D Liebschner, PV Afonine, NW Moriarty, BK Poon, OV Sobolev, ... Acta Crystallographica Section D: Structural Biology 73 (2), 148-157, 2017 | 620 | 2017 |
| Automated structure solution with the PHENIX suite PH Zwart, PV Afonine, RW Grosse-Kunstleve, LW Hung, TR Ioerger, ... Structural proteomics: high-throughput methods, 419-435, 2008 | 587 | 2008 |
| Engineering dynamic pathway regulation using stress-response promoters RH Dahl, F Zhang, J Alonso-Gutierrez, E Baidoo, TS Batth, ... Nature biotechnology 31 (11), 1039-1046, 2013 | 526 | 2013 |
| Cross-validated maximum likelihood enhances crystallographic simulated annealing refinement PD Adams, NS Pannu, RJ Read, AT Brünger Proceedings of the National Academy of Sciences 94 (10), 5018-5023, 1997 | 526 | 1997 |
Pavel AfonineScientist at LBNLVerified email at lbl.gov
