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Ido Machol
Ido Machol
Verified email at bcm.edu
Title
Cited by
Cited by
Year
A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping
SSP Rao, MH Huntley, NC Durand, EK Stamenova, ID Bochkov, ...
Cell 159 (7), 1665-1680, 2014
72652014
Juicer provides a one-click system for analyzing loop-resolution Hi-C experiments
NC Durand, MS Shamim, I Machol, SSP Rao, MH Huntley, ES Lander, ...
Cell systems 3 (1), 95-98, 2016
20962016
De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds
O Dudchenko, SS Batra, AD Omer, SK Nyquist, M Hoeger, NC Durand, ...
Science 356 (6333), 92-95, 2017
15442017
Juicebox provides a visualization system for Hi-C contact maps with unlimited zoom
NC Durand, JT Robinson, MS Shamim, I Machol, JP Mesirov, ES Lander, ...
Cell systems 3 (1), 99-101, 2016
12192016
The energetics and physiological impact of cohesin extrusion
L Vian, A Pękowska, SSP Rao, KR Kieffer-Kwon, S Jung, L Baranello, ...
Cell 173 (5), 1165-1178. e20, 2018
5162018
Deletion of DXZ4 on the human inactive X chromosome alters higher-order genome architecture
EM Darrow, MH Huntley, O Dudchenko, EK Stamenova, NC Durand, ...
Proceedings of the National Academy of Sciences 113 (31), E4504-E4512, 2016
2832016
Static and dynamic DNA loops form AP-1-bound activation hubs during macrophage development
DH Phanstiel, K Van Bortle, D Spacek, GT Hess, MS Shamim, I Machol, ...
Molecular cell 67 (6), 1037-1048. e6, 2017
2602017
Genetic determinants of co-accessible chromatin regions in activated T cells across humans
RE Gate, CS Cheng, AP Aiden, A Siba, M Tabaka, D Lituiev, I Machol, ...
Nature genetics 50 (8), 1140-1150, 2018
1602018
Juicer provides a one-click system for analyzing loop-resolution Hi-C experiments. Cell Syst 3: 95–98
NC Durand, MS Shamim, I Machol, SSP Rao, MH Huntley, ES Lander, ...
702016
Hybrid de novo genome assembly and centromere characterization of the gray mouse lemur (Microcebus murinus)
PA Larsen, RA Harris, Y Liu, SC Murali, CR Campbell, AD Brown, ...
BMC biology 15, 1-17, 2017
562017
Detection of low-level parental somatic mosaicism for clinically relevant SNVs and indels identified in a large exome sequencing dataset
DD Domogala, T Gambin, R Zemet, CW Wu, KV Schulze, Y Yang, ...
Human Genomics 15, 1-11, 2021
132021
Hi-C yields chromosome-length scaffolds for a legume genome, Trifolium subterraneum
O Dudchenko, M Pham, C Lui, SS Batra, M Hoeger, SK Nyquist, ...
bioRxiv, 473553, 2018
72018
Genetic determinants of chromatin accessibility and gene regulation in T cell activation across human individuals
CS Cheng, RE Gate, AP Aiden, A Siba, M Tabaka, D Lituiev, I Machol, ...
bioRxiv 90241 (2016), 2016
52016
Evaluation of an automated genome interpretation model for rare disease routinely used in a clinical genetic laboratory
L Meng, R Attali, T Talmy, Y Regev, N Mizrahi, P Smirin-Yosef, L Vossaert, ...
Genetics in Medicine 25 (6), 100830, 2023
42023
Altered Vision Via Streamed Optical Remapping
MS Shamim, SSP Rao, I Machol, EL Aiden
US Patent App. 15/506,104, 2018
22018
Correction to: Whole exome sequencing identifies novel candidate genes that modify chronic obstructive pulmonary disease susceptibility
S Bruse, M Moreau, Y Bromberg, JH Jang, N Wang, H Ha, M Picchi, Y Lin, ...
Human Genomics 15, 2021
2021
Genetic determinants of chromatin accessibility in T cell activation across humans
RE Gate, CS Cheng, AP Aiden, A Siba, M Tabaka, D Lituiev, I Machol, ...
2016
Crispr Engineering in CD34+ Progenitors Reveals Cis-Acting Regulatory Regions Mediating 3D Interactions and Stem Cell Fate Decisions
M Jeong, Y Lei, I Bochkov, MS Shamim, AG Guzman, SC Huang, ...
Blood 128 (22), 1466, 2016
2016
Hi-C yields chromosome-length scaffolds for a legume genome, Trifolium
O Dudchenko, M Pham, C Lui, SS Batra, M Hoeger, SK Nyquist, ...
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Articles 1–19