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Otto Pulkkinen
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Year
Distance matters: the impact of gene proximity in bacterial gene regulation
O Pulkkinen, R Metzler
Physical review letters 110 (19), 198101, 2013
1222013
Fluctuations of hi-hat timing and dynamics in a virtuoso drum track of a popular music recording
E Räsänen, O Pulkkinen, T Virtanen, M Zollner, H Hennig
PLoS One 10 (6), e0127902, 2015
442015
Contrasting the impact of cytotoxic and cytostatic drug therapies on tumour progression
JV Anttila, M Shubin, J Cairns, F Borse, Q Guo, T Mononen, ...
PLoS computational biology 15 (11), e1007493, 2019
402019
Burst statistics in an early biofilm quorum sensing model: the role of spatial colony-growth heterogeneity
O Kindler, O Pulkkinen, AG Cherstvy, R Metzler
Scientific Reports 9 (1), 12077, 2019
282019
Variance-corrected Michaelis-Menten equation predicts transient rates of single-enzyme reactions and response times in bacterial gene-regulation
O Pulkkinen, R Metzler
Scientific Reports 5, 17820, 2016
262016
Diffusion through thin membranes: Modeling across scales
V Aho, K Mattila, T Kühn, P Kekäläinen, O Pulkkinen, RB Minussi, ...
Physical Review E 93 (4), 043309, 2016
212016
Cluster size distributions in particle systems with asymmetric dynamics
O Pulkkinen, J Merikoski
Physical Review E 64 (5), 056114, 2001
142001
Phase transitions on Markovian bipartite graphs—an application of the zero-range process
O Pulkkinen, J Merikoski
Journal of statistical physics 119, 881-907, 2005
102005
Multiobjective optimization identifies cancer-selective combination therapies
OI Pulkkinen, P Gautam, V Mustonen, T Aittokallio
PLoS Computational Biology 16 (12), e1008538, 2020
92020
Polymer dynamics in time-dependent periodic potentials
J Kauttonen, J Merikoski, O Pulkkinen
Physical Review E 77 (6), 061131, 2008
82008
Roughness of two nonintersecting one-dimensional interfaces
J Juntunen, O Pulkkinen, J Merikoski
Physical Review E 76 (4), 041607, 2007
82007
Boundary driven zero-range processes in random media
O Pulkkinen
Journal of Statistical Physics 128, 1289-1305, 2007
82007
Target-specific compound selectivity for multi-target drug discovery and repurposing
T Wang, OI Pulkkinen, T Aittokallio
Frontiers in pharmacology 13, 1003480, 2022
72022
Finite-size effects in dynamics of zero-range processes
J Juntunen, O Pulkkinen, J Merikoski
Physical Review E 82 (3), 031119, 2010
32010
Dynamics of gene expression under feedback
O Pulkkinen, J Berg
arXiv preprint arXiv:0807.3521, 2008
22008
Zero-Range Processes and their applications
O Pulkkinen
Research report/Department of Physics, University of Jyväskylä, 2007
12007
State estimation of long-range correlated non-equilibrium systems: media estimation
O Pulkkinen
Journal of Statistical Mechanics: Theory and Experiment 2010 (03), L03003, 2010
2010
Yksiulotteisten rajapintojen kinetiikan kuvaaminen stokastisilla hilamalleilla
O Pulkkinen
1999
Supplementary Information: Variance-corrected Michaelis-Menten equation predicts transient rates of single-enzyme reactions and response times in bacterial gene-regulation
O Pulkkinen, R Metzler
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Articles 1–19