| A cross-platform toolkit for mass spectrometry and proteomics MC Chambers, B Maclean, R Burke, D Amodei, DL Ruderman, ... Nature biotechnology 30 (10), 918-920, 2012 | 3548 | 2012 |
| ProteoWizard: open source software for rapid proteomics tools development D Kessner, M Chambers, R Burke, D Agus, P Mallick Bioinformatics 24 (21), 2534-2536, 2008 | 2022 | 2008 |
| The peptideatlas project F Desiere, EW Deutsch, NL King, AI Nesvizhskii, P Mallick, J Eng, S Chen, ... Nucleic acids research 34 (suppl_1), D655-D658, 2006 | 969 | 2006 |
| How many human proteoforms are there? R Aebersold, JN Agar, IJ Amster, MS Baker, CR Bertozzi, ES Boja, ... Nature chemical biology 14 (3), 206-214, 2018 | 889 | 2018 |
| Computational prediction of proteotypic peptides for quantitative proteomics P Mallick, M Schirle, SS Chen, MR Flory, H Lee, D Martin, J Ranish, ... Nature biotechnology 25 (1), 125-131, 2007 | 837 | 2007 |
| Neuronal activity promotes glioma growth through neuroligin-3 secretion HS Venkatesh, TB Johung, V Caretti, A Noll, Y Tang, S Nagaraja, ... Cell 161 (4), 803-816, 2015 | 755 | 2015 |
| Proteomics: a pragmatic perspective P Mallick, B Kuster Nature biotechnology 28 (7), 695-709, 2010 | 568 | 2010 |
| A high-confidence human plasma proteome reference set with estimated concentrations in PeptideAtlas T Farrah, EW Deutsch, GS Omenn, DS Campbell, Z Sun, JA Bletz, ... Molecular & cellular proteomics 10 (9), 2011 | 508 | 2011 |
| Data conversion with ProteoWizard msConvert R Adusumilli, P Mallick Proteomics: methods and protocols, 339-368, 2017 | 496 | 2017 |
| Scoring proteomes with proteotypic peptide probes B Kuster, M Schirle, P Mallick, R Aebersold Nature reviews Molecular cell biology 6 (7), 577-583, 2005 | 434 | 2005 |
| Characterizing deformability and surface friction of cancer cells S Byun, S Son, D Amodei, N Cermak, J Shaw, JH Kang, VC Hecht, ... Proceedings of the National Academy of Sciences 110 (19), 7580-7585, 2013 | 414 | 2013 |
| Integration with the human genome of peptide sequences obtained by high-throughput mass spectrometry F Desiere, EW Deutsch, AI Nesvizhskii, P Mallick, NL King, JK Eng, ... Genome biology 6, 1-12, 2005 | 378 | 2005 |
| Building high-quality assay libraries for targeted analysis of SWATH MS data OT Schubert, LC Gillet, BC Collins, P Navarro, G Rosenberger, WE Wolski, ... Nature protocols 10 (3), 426-441, 2015 | 361 | 2015 |
| Semi-automatically mapping structured sources into the semantic web CA Knoblock, P Szekely, JL Ambite, A Goel, S Gupta, K Lerman, ... Extended semantic web conference, 375-390, 2012 | 314 | 2012 |
| Employing ProteoWizard to convert raw mass spectrometry data JD Holman, DL Tabb, P Mallick Current protocols in bioinformatics, 13.24. 1-13.24. 9, 2014 | 312 | 2014 |
| Cardinal: an R package for statistical analysis of mass spectrometry-based imaging experiments KD Bemis, A Harry, LS Eberlin, C Ferreira, SM van de Ven, P Mallick, ... Bioinformatics 31 (14), 2418-2420, 2015 | 280 | 2015 |
| GXXXG and AXXXA: common α-helical interaction motifs in proteins, particularly in extremophiles G Kleiger, R Grothe, P Mallick, D Eisenberg Biochemistry 41 (19), 5990-5997, 2002 | 259 | 2002 |
| High throughput quantitative analysis of serum proteins using glycopeptide capture and liquid chromatography mass spectrometry H Zhang, CY Eugene, X Li, P Mallick, KS Kelly-Spratt, CD Masselon, ... Molecular & Cellular Proteomics 4 (2), 144-155, 2005 | 235 | 2005 |
| Genomic evidence that the intracellular proteins of archaeal microbes contain disulfide bonds P Mallick, DR Boutz, D Eisenberg, TO Yeates Proceedings of the National Academy of Sciences 99 (15), 9679-9684, 2002 | 216 | 2002 |
| The standard protein mix database: a diverse data set to assist in the production of improved peptide and protein identification software tools J Klimek, JS Eddes, L Hohmann, J Jackson, A Peterson, S Letarte, ... The Journal of Proteome Research 7 (01), 96-103, 2008 | 203 | 2008 |
