| Tensorcircuit: a quantum software framework for the nisq era SX Zhang, J Allcock, ZQ Wan, S Liu, J Sun, H Yu, XH Yang, J Qiu, Z Ye, ... Quantum 7, 912, 2023 | 75 | 2023 |
| Predicting protein targets for drug-like compounds using transcriptomics NA Pabon, Y Xia, SK Estabrooks, Z Ye, AK Herbrand, E Süß, RM Biondi, ... PLoS computational biology 14 (12), e1006651, 2018 | 55 | 2018 |
| A specific inhibitor of ALDH1A3 regulates retinoic acid biosynthesis in glioma stem cells J Li, S Garavaglia, Z Ye, A Moretti, OV Belyaeva, A Beiser, M Ibrahim, ... Communications Biology 4 (1), 1420, 2021 | 29 | 2021 |
| Optimal strategies for virtual screening of induced-fit and flexible target in the 2015 D3R Grand Challenge Z Ye, MP Baumgartner, BM Wingert, CJ Camacho Journal of computer-aided molecular design 30, 695-706, 2016 | 28 | 2016 |
| Symmetry breaking during homodimeric assembly activates an E3 ubiquitin ligase Z Ye, PG Needham, SK Estabrooks, SK Whitaker, BL Garcia, S Misra, ... Scientific reports 7 (1), 1789, 2017 | 22 | 2017 |
| Improved the protein complex prediction with protein language models B Chen, Z Xie, J Qiu, Z Ye, J Xu, J Tang BioRxiv, 2022.09. 15.508065, 2022 | 10 | 2022 |
| Defining the Kv2. 1–syntaxin molecular interaction identifies a first-in-class small molecule neuroprotectant CY Yeh, Z Ye, A Moutal, S Gaur, AM Henton, S Kouvaros, JL Saloman, ... Proceedings of the National Academy of Sciences 116 (31), 15696-15705, 2019 | 10 | 2019 |
| MarkovHC: Markov hierarchical clustering for the topological structure of high-dimensional single-cell omics data with transition pathway and critical point detection Z Wang, Y Zhong, Z Ye, L Zeng, Y Chen, M Shi, Z Yuan, Q Zhou, M Qian, ... Nucleic Acids Research 50 (1), 46-56, 2022 | 9 | 2022 |
| Improved the heterodimer protein complex prediction with protein language models B Chen, Z Xie, J Qiu, Z Ye, J Xu, J Tang Briefings in Bioinformatics 24 (4), bbad221, 2023 | 8 | 2023 |
| SPLDExtraTrees: robust machine learning approach for predicting kinase inhibitor resistance ZY Yang, ZF Ye, YJ Xiao, CY Hsieh, SY Zhang Briefings in Bioinformatics 23 (3), bbac050, 2022 | 8 | 2022 |
| MetalProGNet: a structure-based deep graph model for metalloprotein–ligand interaction predictions D Jiang, Z Ye, CY Hsieh, Z Yang, X Zhang, Y Kang, H Du, Z Wu, J Wang, ... Chemical Science 14 (8), 2054-2069, 2023 | 6 | 2023 |
| ScaffComb: A Phenotype‐Based Framework for Drug Combination Virtual Screening in Large‐Scale Chemical Datasets Z Ye, F Chen, J Zeng, J Gao, MQ Zhang Advanced Science 8 (24), 2102092, 2021 | 6 | 2021 |
| Multi-task bioassay pre-training for protein-ligand binding affinity prediction J Yan, Z Ye, Z Yang, C Lu, S Zhang, Q Liu, J Qiu Briefings in Bioinformatics 25 (1), bbad451, 2024 | 4 | 2024 |
| A mutation-induced drug resistance database (MdrDB) Z Yang, Z Ye, J Qiu, R Feng, D Li, C Hsieh, J Allcock, S Zhang Communications Chemistry 6 (1), 123, 2023 | 4 | 2023 |
| Development of a 32-gene signature using machine learning for accurate prediction of inflammatory bowel disease S Yu, M Zhang, Z Ye, Y Wang, X Wang, YG Chen Cell Regeneration 12 (1), 8, 2023 | 4 | 2023 |
| Protein-Ligand Complex Generator & Drug Screening via Tiered Tensor Transform JP Mailoa, Z Ye, J Qiu, CY Hsieh, S Zhang arXiv preprint arXiv:2301.00984, 2023 | 1 | 2023 |
| MdrDB: Mutation-induced drug resistance DataBase Z Yang, Z Ye, J Qiu, R Feng, D Li, C Hsieh, J Allcock, SY Zhang bioRxiv, 2022.10. 20.513118, 2022 | | 2022 |
| Proteome-scale detection of drug-target interactions using correlations in transcriptomic perturbations NA Pabon, Y Xia, SK Estabrooks, Z Ye, AK Herbrand, E Süß, RM Biondi, ... bioRxiv, 254367, 2018 | | 2018 |
| IDENTIFICATION OF NOVEL INHIBITORS OF UBIQUITINATION THAT IMPROVE RESCUE OF F508DEL-CFTR BY VX-809 J Goeckeler-Fried, SK Estabrooks, A Chiang, W Chung, Z Ye, RA Denny, ... PEDIATRIC PULMONOLOGY 51, 206-206, 2016 | | 2016 |
| Improve the Protein Complex Prediction with Protein B Chen, Z Xie, J Xu, J Qiu, Z Ye, J Tang | | |
Jiezhong QiuZhejiang University - Zhejiang Lab Hundred Talents Program ResearcherVerified email at zhejianglab.com
