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James Fleming
James Fleming
Postdoctoral Researcher, Oslo University Natural History Museum
Verified email at nhm.uio.no
Title
Cited by
Cited by
Year
Bayesian methods outperform parsimony but at the expense of precision in the estimation of phylogeny from discrete morphological data
JE O'Reilly, MN Puttick, L Parry, AR Tanner, JE Tarver, J Fleming, ...
Biology letters 12 (4), 20160081, 2016
2082016
Uncertain-tree: discriminating among competing approaches to the phylogenetic analysis of phenotype data
MN Puttick, JE O'Reilly, AR Tanner, JF Fleming, J Clark, L Holloway, ...
Proceedings of the Royal Society B: Biological Sciences 284 (1846), 20162290, 2017
1382017
Pancrustacean evolution illuminated by taxon-rich genomic-scale data sets with an expanded remipede sampling
J Lozano-Fernandez, M Giacomelli, JF Fleming, A Chen, J Vinther, ...
Genome Biology and Evolution 11 (8), 2055-2070, 2019
1032019
The Ediacaran origin of Ecdysozoa: integrating fossil and phylogenomic data
RJ Howard, M Giacomelli, J Lozano-Fernandez, GD Edgecombe, ...
Journal of the Geological Society 179 (4), jgs2021-107, 2022
292022
Parsimony and maximum-likelihood phylogenetic analyses of morphology do not generally integrate uncertainty in inferring evolutionary history: a response to Brown et al.
MN Puttick, JE O'Reilly, D Oakley, AR Tanner, JF Fleming, J Clark, ...
Proceedings of the Royal Society B: Biological Sciences 284 (1864), 20171636, 2017
272017
Molecular palaeontology illuminates the evolution of ecdysozoan vision
JF Fleming, RM Kristensen, MV Sørensen, TYS Park, K Arakawa, ...
Proceedings of the Royal Society B 285 (1892), 20182180, 2018
242018
A novel approach to investigate the effect of tree reconstruction artifacts in single-gene analysis clarifies opsin evolution in nonbilaterian metazoans
JF Fleming, R Feuda, NW Roberts, D Pisani
Genome biology and evolution 12 (2), 3906-3916, 2020
202020
Hagfish genome elucidates vertebrate whole-genome duplication events and their evolutionary consequences
D Yu, Y Ren, M Uesaka, AJS Beavan, M Muffato, J Shen, Y Li, I Sato, ...
Nature Ecology & Evolution, 1-17, 2024
16*2024
Comprehensive transcriptome sequencing of Tanaidacea with proteomic evidences for their silk
K Kakui, JF Fleming, M Mori, Y Fujiwara, K Arakawa
Genome biology and evolution 13 (12), evab281, 2021
162021
Systematics of tardigrada: A reanalysis of tardigrade taxonomy with specific reference to Guil et al.(2019)
JF Fleming, K Arakawa
Zoologica scripta 50 (3), 376-382, 2021
152021
Eye-transcriptome and genome-wide sequencing for Scolecophidia: implications for inferring the visual system of the ancestral snake
DJ Gower, JF Fleming, D Pisani, FJ Vonk, HMI Kerkkamp, L Peichl, ...
Genome biology and evolution 13 (12), evab253, 2021
82021
Identifying and addressing methodological incongruence in phylogenomics: A review
JF Fleming, A Valero‐Gracia, TH Struck
Evolutionary Applications 16 (6), 1087-1104, 2023
62023
nRCFV: a new, dataset-size-independent metric to quantify compositional heterogeneity in nucleotide and amino acid datasets
JF Fleming, TH Struck
BMC bioinformatics 24 (1), 145, 2023
52023
The wealth of shared resources: improving molecular taxonomy using eDNA and public databases
JF Fleming
Zoologica Scripta 52 (3), 226-234, 2023
32023
New Tardigrade opsins and differential expression analyses show ontogenic variation in light perception
JF Fleming, D Pisani, K Arakawa
Genome biology and evolution 13 (8), evab164, 2021
32021
The Evolution of Temperature and Desiccation-Related Protein Families in Tardigrada Reveals a Complex Acquisition of Extremotolerance
JF Fleming, D Pisani, K Arakawa
Genome Biology and Evolution 16 (1), evad217, 2024
22024
Scoutknife: A naïve, whole genome informed phylogenetic robusticity metric
J Fleming, PM Eriksen, TH Struck
F1000Research 12, 945, 2023
2023
Hagfish genome illuminates vertebrate whole genome duplications and their evolutionary consequences
J Pascual-Anaya, D Yu, Y Ren, M Uesaka, A Beavan, M Muffato, J Shen, ...
2023
Concerning the evolution of opsin proteins, and the relationships between the families therein
JF Fleming
University of Bristol, 2018
2018
Clark, J.,... Donoghue, PCJ (2017). Parsimony and Maximum Likelihood phylogenetic analyses of morphology do not generally integrate uncertainty in inferring evolutionary …
MN Puttick, JE O’Reilly, D Oakley, AR Tanner, JF Fleming
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