Peter Midford
Cited by
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Estimating a binary character's effect on speciation and extinction
WP Maddison, PE Midford, SP Otto
Systematic biology 56 (5), 701-710, 2007
The MetaCyc database of metabolic pathways and enzymes
R Caspi, R Billington, CA Fulcher, IM Keseler, A Kothari, ...
Nucleic acids research 46 (D1), D633-D639, 2018
The MetaCyc database of metabolic pathways and enzymes-a 2019 update
R Caspi, R Billington, IM Keseler, A Kothari, M Krummenacker, ...
Nucleic acids research 48 (D1), D445-D453, 2020
The BioCyc collection of microbial genomes and metabolic pathways
PD Karp, R Billington, R Caspi, CA Fulcher, M Latendresse, A Kothari, ...
Briefings in bioinformatics 20 (4), 1085-1093, 2019
Synthesis of phylogeny and taxonomy into a comprehensive tree of life
CE Hinchliff, SA Smith, JF Allman, JG Burleigh, R Chaudhary, LM Coghill, ...
Proceedings of the National Academy of Sciences 112 (41), 12764-12769, 2015
An introduction to phylogenetically based statistical methods, with a new method for confidence intervals on ancestral values
T Garland Jr, PE Midford, AR Ives
American Zoologist 39 (2), 374-388, 1999
PDAP package of Mesquite
PE Midford, T Garland Jr, WP Maddison
See www. mesquiteproject. org/pdap_mesquite, 2005
Within-species variation and measurement error in phylogenetic comparative methods
AR Ives, PE Midford, T Garland Jr
Systematic biology 56 (2), 252-270, 2007
The CIPRES portals
MA Miller, MT Holder, R Vos, PE Midford, T Liebowitz, L Chan, P Hoover, ...
CIPRES, 2009
Exploring power and parameter estimation of the BiSSE method for analyzing species diversification
MP Davis, PE Midford, W Maddison
BMC evolutionary biology 13, 1-11, 2013
Finding our way through phenotypes
AR Deans, SE Lewis, E Huala, SS Anzaldo, M Ashburner, JP Balhoff, ...
PLoS biology 13 (1), e1002033, 2015
Patterns in root traits of woody species hosting arbuscular and ectomycorrhizas: implications for the evolution of belowground strategies
LH Comas, HS Callahan, PE Midford
Ecology and evolution 4 (15), 2979-2990, 2014
Semantics in support of biodiversity knowledge discovery: an introduction to the biological collections ontology and related ontologies
RL Walls, J Deck, R Guralnick, S Baskauf, R Beaman, S Blum, S Bowers, ...
PloS one 9 (3), e89606, 2014
Evolutionary patterns and biogeochemical significance of angiosperm root traits
LH Comas, KE Mueller, LL Taylor, PE Midford, HS Callahan, DJ Beerling
International Journal of Plant Sciences 173 (6), 584-595, 2012
The ecocyc database
PD Karp, WK Ong, S Paley, R Billington, R Caspi, C Fulcher, A Kothari, ...
EcoSal Plus 8 (1), 10.1128/ecosalplus. ESP-0006-2018, 2018
The EcoCyc database in 2021
IM Keseler, S Gama-Castro, A Mackie, R Billington, C Bonavides-Martínez, ...
Frontiers in microbiology 12, 711077, 2021
Pathway Tools version 23.0 update: software for pathway/genome informatics and systems biology
PD Karp, PE Midford, R Billington, A Kothari, M Krummenacker, ...
Briefings in bioinformatics 22 (1), 109-126, 2021
NeXML: rich, extensible, and verifiable representation of comparative data and metadata
RA Vos, JP Balhoff, JA Caravas, MT Holder, H Lapp, WP Maddison, ...
Systematic biology 61 (4), 675-689, 2012
Evolutionary characters, phenotypes and ontologies: curating data from the systematic biology literature
WM Dahdul, JP Balhoff, J Engeman, T Grande, EJ Hilton, C Kothari, ...
PLoS One 5 (5), e10708, 2010
The teleost anatomy ontology: anatomical representation for the genomics age
WM Dahdul, JG Lundberg, PE Midford, JP Balhoff, H Lapp, TJ Vision, ...
Systematic biology 59 (4), 369-383, 2010
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