Follow
Peter Midford
Title
Cited by
Cited by
Year
Estimating a binary character's effect on speciation and extinction
WP Maddison, PE Midford, SP Otto
Systematic biology 56 (5), 701-710, 2007
11352007
The MetaCyc database of metabolic pathways and enzymes
R Caspi, R Billington, CA Fulcher, IM Keseler, A Kothari, ...
Nucleic acids research 46 (D1), D633-D639, 2018
8132018
The MetaCyc database of metabolic pathways and enzymes-a 2019 update
R Caspi, R Billington, IM Keseler, A Kothari, M Krummenacker, ...
Nucleic acids research 48 (D1), D445-D453, 2020
7562020
The BioCyc collection of microbial genomes and metabolic pathways
PD Karp, R Billington, R Caspi, CA Fulcher, M Latendresse, A Kothari, ...
Briefings in bioinformatics 20 (4), 1085-1093, 2019
7162019
Synthesis of phylogeny and taxonomy into a comprehensive tree of life
CE Hinchliff, SA Smith, JF Allman, JG Burleigh, R Chaudhary, LM Coghill, ...
Proceedings of the National Academy of Sciences 112 (41), 12764-12769, 2015
7112015
An introduction to phylogenetically based statistical methods, with a new method for confidence intervals on ancestral values
T Garland Jr, PE Midford, AR Ives
American Zoologist 39 (2), 374-388, 1999
6261999
PDAP package of Mesquite
PE Midford, T Garland Jr, WP Maddison
See www. mesquiteproject. org/pdap_mesquite, 2005
552*2005
Within-species variation and measurement error in phylogenetic comparative methods
AR Ives, PE Midford, T Garland Jr
Systematic biology 56 (2), 252-270, 2007
5132007
The CIPRES portals
MA Miller, MT Holder, R Vos, PE Midford, T Liebowitz, L Chan, P Hoover, ...
CIPRES, 2009
4052009
Exploring power and parameter estimation of the BiSSE method for analyzing species diversification
MP Davis, PE Midford, W Maddison
BMC evolutionary biology 13, 1-11, 2013
2792013
Finding our way through phenotypes
AR Deans, SE Lewis, E Huala, SS Anzaldo, M Ashburner, JP Balhoff, ...
PLoS biology 13 (1), e1002033, 2015
2292015
Patterns in root traits of woody species hosting arbuscular and ectomycorrhizas: implications for the evolution of belowground strategies
LH Comas, HS Callahan, PE Midford
Ecology and evolution 4 (15), 2979-2990, 2014
1802014
Semantics in support of biodiversity knowledge discovery: an introduction to the biological collections ontology and related ontologies
RL Walls, J Deck, R Guralnick, S Baskauf, R Beaman, S Blum, S Bowers, ...
PloS one 9 (3), e89606, 2014
1752014
Evolutionary patterns and biogeochemical significance of angiosperm root traits
LH Comas, KE Mueller, LL Taylor, PE Midford, HS Callahan, DJ Beerling
International Journal of Plant Sciences 173 (6), 584-595, 2012
1732012
The ecocyc database
PD Karp, WK Ong, S Paley, R Billington, R Caspi, C Fulcher, A Kothari, ...
EcoSal Plus 8 (1), 10.1128/ecosalplus. ESP-0006-2018, 2018
1712018
The EcoCyc database in 2021
IM Keseler, S Gama-Castro, A Mackie, R Billington, C Bonavides-Martínez, ...
Frontiers in microbiology 12, 711077, 2021
1452021
Pathway Tools version 23.0 update: software for pathway/genome informatics and systems biology
PD Karp, PE Midford, R Billington, A Kothari, M Krummenacker, ...
Briefings in bioinformatics 22 (1), 109-126, 2021
1382021
NeXML: rich, extensible, and verifiable representation of comparative data and metadata
RA Vos, JP Balhoff, JA Caravas, MT Holder, H Lapp, WP Maddison, ...
Systematic biology 61 (4), 675-689, 2012
1052012
Evolutionary characters, phenotypes and ontologies: curating data from the systematic biology literature
WM Dahdul, JP Balhoff, J Engeman, T Grande, EJ Hilton, C Kothari, ...
PLoS One 5 (5), e10708, 2010
1042010
The teleost anatomy ontology: anatomical representation for the genomics age
WM Dahdul, JG Lundberg, PE Midford, JP Balhoff, H Lapp, TJ Vision, ...
Systematic biology 59 (4), 369-383, 2010
1022010
The system can't perform the operation now. Try again later.
Articles 1–20