Mukul S. Bansal

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Oliver EulensteinProfessor of Computer Science. Iowa State UniversityVerified email at iastate.edu
J. Gordon BurleighGainesville, Florida, USAVerified email at ufl.edu
Manolis KellisProfessor of Computer Science, MIT and Broad InstituteVerified email at mit.edu
Andre WeheVerified email at wehe.us
Yi-Chieh WuHarvey Mudd CollegeVerified email at cs.hmc.edu
David Fernández-BacaProfessor of Computer Science, Iowa State UniversityVerified email at iastate.edu
Eric AlmProfessor of Biological Engineering, MITVerified email at mit.edu
Johann Peter GogartenBoT Distinguished Professor of Molecular and Cell Biology, University of ConnecticutVerified email at uconn.edu
Matthew D. RasmussenCornell UniversityVerified email at alum.mit.edu
Todd J VisionUniversity of North Carolina at Chapel HillVerified email at bio.unc.edu
Ron ShamirProfessor of Computer Science and Bioinformatics, Tel Aviv UniversityVerified email at tauex.tau.ac.il
Stefanie HartmannUniversity of Potsdam, GermanyVerified email at uni-potsdam.de
Samuel SledzieskiPhD Student in Computer Science, Massachusetts Institute of TehchnologyVerified email at mit.edu
Ruchi ChaudharyPrincipal Scientist, Computational Biology at Janssen Research and DevelopmentVerified email at its.jnj.com
Jianrong DongPostdoc associate, Dept. of Molecular and Cellular Biology, Baylor College of MedicineVerified email at bcm.edu
Wen-Chieh ChangJohn DeereVerified email at alumni.iastate.edu
Hridesh RajanDean, Tulane University School of Science and EngineeringVerified email at acm.org

Mukul S. Bansal

Associate Professor of Computer Science and Engineering, University of Connecticut

Verified email at uconn.edu - Homepage

Phylogenomics Comparative Genomics Bioinformatics Computational Biology


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Integrative analysis of 111 reference human epigenomes Roadmap Epigenomics Consortium Integrative analysis coordination Kundaje ... Nature 518 (7539), 317-330, 2015	6340*	2015
A comparative encyclopedia of DNA elements in the mouse genome F Yue, Y Cheng, A Breschi, J Vierstra, W Wu, T Ryba, R Sandstrom, Z Ma, ... Nature 515 (7527), 355-364, 2014	1996	2014
Efficient algorithms for the reconciliation problem with gene duplication, horizontal transfer and loss MS Bansal, EJ Alm, M Kellis Bioinformatics 28 (12), i283-i291, 2012	227	2012
DupTree: a program for large-scale phylogenetic analyses using gene tree parsimony A Wehe, MS Bansal, JG Burleigh, O Eulenstein Bioinformatics 24 (13), 1540-1541, 2008	177	2008
Genome-scale phylogenetics: inferring the plant tree of life from 18,896 gene trees JG Burleigh, MS Bansal, O Eulenstein, S Hartmann, A Wehe, TJ Vision Systematic Biology 60 (2), 117-125, 2011	145	2011
TreeFix: statistically informed gene tree error correction using species trees YC Wu, MD Rasmussen, MS Bansal, M Kellis Systematic biology 62 (1), 110-120, 2013	127	2013
Robinson-foulds supertrees MS Bansal, JG Burleigh, O Eulenstein, D Fernández-Baca Algorithms for molecular biology 5, 1-12, 2010	123	2010
iGTP: a software package for large-scale gene tree parsimony analysis R Chaudhary, MS Bansal, A Wehe, D Fernández-Baca, O Eulenstein BMC bioinformatics 11, 1-7, 2010	106	2010
RANGER-DTL 2.0: rigorous reconstruction of gene-family evolution by duplication, transfer and loss MS Bansal, M Kellis, M Kordi, S Kundu Bioinformatics 34 (18), 3214-3216, 2018	82	2018
Most parsimonious reconciliation in the presence of gene duplication, loss, and deep coalescence using labeled coalescent trees YC Wu, MD Rasmussen, MS Bansal, M Kellis Genome research 24 (3), 475-486, 2014	81	2014
Reconciliation Revisted: Handling Multiple Optima when Reconciling with Duplication, Transfer, and Loss MS Bansal, EJ Alm, M Kellis RECOMB 2013, 1-13, 2013	74	2013
Improved gene tree error correction in the presence of horizontal gene transfer MS Bansal, YC Wu, EJ Alm, M Kellis Bioinformatics 31 (8), 1211-1218, 2015	72	2015
Efficient genome-scale phylogenetic analysis under the duplication-loss and deep coalescence cost models MS Bansal, JG Burleigh, O Eulenstein BMC bioinformatics 11, 1-9, 2010	68	2010
Pareto-optimal phylogenetic tree reconciliation R Libeskind-Hadas, YC Wu, MS Bansal, M Kellis Bioinformatics 30 (12), i87-i95, 2014	66	2014
Heuristics for the Gene-Duplication Problem: A Θ(n) Speed-Up for the Local Search MS Bansal, JG Burleigh, O Eulenstein, A Wehe Research in Computational Molecular Biology: 11th Annual International …, 2007	64	2007
The multiple gene duplication problem revisited MS Bansal, O Eulenstein Bioinformatics 24 (13), i132-i138, 2008	56	2008
Improved fully polynomial time approximation scheme for the 0-1 multiple-choice knapsack problem M Bansal, V Venkaiah International Institute of Information Technology Tech Report, 1-9, 2004	49	2004
Comparing and aggregating partially resolved trees MS Bansal, J Dong, D Fernández-Baca Theoretical Computer Science, 2011	39	2011
Systematic inference of highways of horizontal gene transfer in prokaryotes MS Bansal, G Banay, TJ Harlow, JP Gogarten, R Shamir Bioinformatics 29 (5), 571-579, 2013	33	2013
A note on the fixed parameter tractability of the gene-duplication problem MS Bansal, R Shamir IEEE/ACM Transactions on Computational Biology and Bioinformatics 8 (3), 848-850, 2010	30	2010

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