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Prem Chapagain
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Intricate functions of matrix metalloproteinases in physiological and pathological conditions
R Mittal, AP Patel, LH Debs, D Nguyen, K Patel, M Grati, J Mittal, D Yan, ...
Journal of cellular physiology 231 (12), 2599-2621, 2016
1832016
The importance of culling in Johne's disease control
Z Lu, RM Mitchell, RL Smith, JS Van Kessel, PP Chapagain, ...
Journal of theoretical biology 254 (1), 135-146, 2008
992008
The integrin binding peptide, ATN-161, as a novel therapy for SARS-CoV-2 infection
BJ Beddingfield, N Iwanaga, PP Chapagain, W Zheng, CJ Roy, TY Hu, ...
Basic to Translational Science 6 (1), 1-8, 2021
832021
Mutation-induced changes in the receptor-binding interface of the SARS-CoV-2 Delta variant B. 1.617. 2 and implications for immune evasion
P Baral, N Bhattarai, ML Hossen, V Stebliankin, BS Gerstman, ...
Biochemical and biophysical research communications 574, 14-19, 2021
802021
Simulation modeling to evaluate the persistence of Mycobacterium avium subsp. paratuberculosis (MAP) on commercial dairy farms in the United States
RM Mitchell, RH Whitlock, SM Stehman, A Benedictus, PP Chapagain, ...
Preventive veterinary medicine 83 (3-4), 360-380, 2008
792008
Potential autoimmunity resulting from molecular mimicry between SARS-CoV-2 spike and human proteins
J Nunez-Castilla, V Stebliankin, P Baral, CA Balbin, M Sobhan, ...
Viruses 14 (7), 1415, 2022
642022
Structures of the kinetically trapped i-motif DNA intermediates
A Garabedian, D Butcher, JL Lippens, J Miksovska, PP Chapagain, ...
Physical Chemistry Chemical Physics 18 (38), 26691-26702, 2016
632016
Potential RNA-dependent RNA polymerase inhibitors as prospective therapeutics against SARS-CoV-2
R Pokhrel, P Chapagain, J Siltberg-Liberles
Journal of medical microbiology 69 (6), 864-873, 2020
602020
The Ebola virus protein VP40 hexamer enhances the clustering of PI (4, 5) P 2 lipids in the plasma membrane
BS Gerstman, RV Stahelin, PP Chapagain
Physical Chemistry Chemical Physics 18 (41), 28409-28417, 2016
552016
Fluorescent protein barrel fluctuations and oxygen diffusion pathways in mCherry
PP Chapagain, CK Regmi, W Castillo
The Journal of chemical physics 135 (23), 2011
552011
A mathematical model of the dynamics of Salmonella Cerro infection in a US dairy herd
PP Chapagain, JS Van Kessel, JS Karns, DR Wolfgang, E Hovingh, ...
Epidemiology & Infection 136 (2), 263-272, 2008
482008
DNA supercoiling, a critical signal regulating the basal expression of the lac operon in Escherichia coli
G Fulcrand, S Dages, X Zhi, P Chapagain, BS Gerstman, D Dunlap, ...
Scientific reports 6 (1), 19243, 2016
462016
A cationic, C-terminal patch and structural rearrangements in Ebola virus matrix VP40 protein control its interactions with phosphatidylserine
K Del Vecchio, CT Frick, JB Gc, S Oda, BS Gerstman, EO Saphire, ...
Journal of biological chemistry 293 (9), 3335-3349, 2018
452018
Molecular dynamics investigations of the α-helix to β-barrel conformational transformation in the RfaH transcription factor
JB Gc, YR Bhandari, BS Gerstman, PP Chapagain
The Journal of Physical Chemistry B 118 (19), 5101-5108, 2014
442014
Exploring the diffusion of molecular oxygen in the red fluorescent protein mCherry using explicit oxygen molecular dynamics simulations
CK Regmi, YR Bhandari, BS Gerstman, PP Chapagain
The journal of physical chemistry B 117 (8), 2247-2253, 2013
422013
Indispensable role of ion channels and transporters in the auditory system
R Mittal, M Aranke, LH Debs, D Nguyen, AP Patel, M Grati, J Mittal, D Yan, ...
Journal of cellular physiology 232 (4), 743-758, 2017
412017
Self-organization in protein folding and the hydrophobic interaction
BS Gerstman, PP Chapagain
The Journal of chemical physics 123 (5), 2005
402005
Molecular mechanisms of pore formation and membrane disruption by the antimicrobial lantibiotic peptide Mutacin 1140
R Pokhrel, N Bhattarai, P Baral, BS Gerstman, JH Park, M Handfield, ...
Physical Chemistry Chemical Physics 21 (23), 12530-12539, 2019
372019
Detection of lipid-induced structural changes of the Marburg virus matrix protein VP40 using hydrogen/deuterium exchange-mass spectrometry
KJ Wijesinghe, S Urata, N Bhattarai, EE Kooijman, BS Gerstman, ...
Journal of Biological Chemistry 292 (15), 6108-6122, 2017
372017
The effect of heterogeneous infectious period and contagiousness on the dynamics of Salmonella transmission in dairy cattle
C Lanzas, S Brien, R Ivanek, Y Lo, PP Chapagain, KA Ray, P Ayscue, ...
Epidemiology & Infection 136 (11), 1496-1510, 2008
372008
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