| A comprehensive benchmarking with practical guidelines for cellular deconvolution of spatial transcriptomics H Li, J Zhou, Z Li, S Chen, X Liao, B Zhang, R Zhang, Y Wang, S Sun, ... Nature Communications 14 (1), 1548, 2023 | 90 | 2023 |
| Protein–RNA interaction prediction with deep learning: structure matters J Wei, S Chen, L Zong, X Gao, Y Li Briefings in bioinformatics 23 (1), bbab540, 2022 | 57 | 2022 |
| Self-supervised contrastive learning for integrative single cell RNA-seq data analysis W Han, Y Cheng, J Chen, H Zhong, Z Hu, S Chen, L Zong, L Hong, ... Briefings in Bioinformatics 23 (5), bbac377, 2022 | 47 | 2022 |
| PPML-Omics: a privacy-preserving federated machine learning method protects patients’ privacy in omic data J Zhou, S Chen, Y Wu, H Li, B Zhang, L Zhou, Y Hu, Z Xiang, Z Li, N Chen, ... Science Advances 10 (5), eadh8601, 2024 | 18 | 2024 |
| Lunar features detection for energy discovery via deep learning S Chen, Y Li, T Zhang, X Zhu, S Sun, X Gao Applied Energy 296, 117085, 2021 | 12 | 2021 |
| Deep learning identifies and quantifies recombination hotspot determinants Y Li, S Chen, T Rapakoulia, H Kuwahara, KY Yip, X Gao Bioinformatics 38 (10), 2683-2691, 2022 | 8 | 2022 |
| The highly conserved RNA-binding specificity of nucleocapsid protein facilitates the identification of drugs with broad anti-coronavirus activity S Fan, W Sun, L Fan, N Wu, W Sun, H Ma, S Chen, Z Li, Y Li, J Zhang, ... Computational and Structural Biotechnology Journal 20, 5040-5044, 2022 | 3 | 2022 |
| An AI Agent for Fully Automated Multi‐Omic Analyses J Zhou, B Zhang, G Li, X Chen, H Li, X Xu, S Chen, W He, C Xu, L Liu, ... Advanced Science, 2407094, 2024 | 2 | 2024 |
| BR-ChromNet: Banding resolution localization of chromosome structural abnormality with conditional random field S Chen, T Hu, N Li, X Gao, Y Yu Journal of Molecular Biology 436 (20), 168733, 2024 | | 2024 |
| A fast and adaptive detection framework for genome-wide chromatin loop mapping from Hi-C data S Chen, J Wang, I Jung, Z Qiu, X Gao, Y Li Genome Research 34 (8), 1174-1184, 2024 | | 2024 |
| KaryoXpert: An accurate chromosome segmentation and classification framework for karyotyping analysis without training with manually labeled metaphase-image mask annotations S Chen, K Zhang, J Hu, N Li, A Xu, H Li, J Zhou, C Huang, Y Yu, X Gao Computers in Biology and Medicine 177, 108601, 2024 | | 2024 |
| ProNet DB: a proteome-wise database for protein surface property representations and RNA-binding profiles J Wei, J Xiao, S Chen, L Zong, X Gao, Y Li Database 2024, baae012, 2024 | | 2024 |
