Giulio Pavesi
Giulio Pavesi
Professor of Molecular Biology (Bioinformatics), University of Milano, Italy
Verified email at - Homepage
Cited by
Cited by
The transcriptional landscape of the mammalian genome
P Carninci, T Kasukawa, S Katayama, J Gough, MC Frith, N Maeda, ...
science 309 (5740), 1559-1563, 2005
Assessing computational tools for the discovery of transcription factor binding sites
M Tompa, N Li, TL Bailey, GM Church, B De Moor, E Eskin, AV Favorov, ...
Nature biotechnology 23 (1), 137-144, 2005
Weeder Web: discovery of transcription factor binding sites in a set of sequences from co-regulated genes
G Pavesi, P Mereghetti, G Mauri, G Pesole
Nucleic acids research 32 (suppl_2), W199-W203, 2004
An algorithm for finding signals of unknown length in DNA sequences
G Pavesi, G Mauri, G Pesole
Bioinformatics 17 (suppl_1), S207-S214, 2001
Pscan: finding over-represented transcription factor binding site motifs in sequences from co-regulated or co-expressed genes
F Zambelli, G Pesole, G Pavesi
Nucleic acids research 37 (suppl_2), W247-W252, 2009
UTRdb and UTRsite (RELEASE 2010): a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs
G Grillo, A Turi, F Licciulli, F Mignone, S Liuni, S Banfi, VA Gennarino, ...
Nucleic acids research 38 (suppl_1), D75-D80, 2010
Bioinformatics approaches for genomics and post genomics applications of next-generation sequencing
DS Horner, G Pavesi, T Castrignano, PDO De Meo, S Liuni, M Sammeth, ...
Briefings in bioinformatics 11 (2), 181-197, 2010
Next generation sequencing of SARS-CoV-2 genomes: challenges, applications and opportunities
M Chiara, AM D’Erchia, C Gissi, C Manzari, A Parisi, N Resta, F Zambelli, ...
Briefings in Bioinformatics 22 (2), 616-630, 2021
Tissue-specific mtDNA abundance from exome data and its correlation with mitochondrial transcription, mass and respiratory activity
AM D'Erchia, A Atlante, G Gadaleta, G Pavesi, M Chiara, C De Virgilio, ...
Mitochondrion 20, 13-21, 2014
Motif discovery and transcription factor binding sites before and after the next-generation sequencing era
F Zambelli, G Pesole, G Pavesi
Briefings in bioinformatics 14 (2), 225-237, 2013
Identification of pathways directly regulated by SHORT VEGETATIVE PHASE during vegetative and reproductive development in Arabidopsis
V Gregis, F Andrés, A Sessa, RF Guerra, S Simonini, JL Mateos, S Torti, ...
Genome biology 14, 1-26, 2013
A perspective of promoter architecture from the CCAAT box
D Dolfini, F Zambelli, G Pavesi, R Mantovani
Cell cycle 8 (24), 4127-4137, 2009
NF-Y coassociates with FOS at promoters, enhancers, repetitive elements, and inactive chromatin regions, and is stereo-positioned with growth-controlling transcription factors
JD Fleming, G Pavesi, P Benatti, C Imbriano, R Mantovani, K Struhl
Genome research 23 (8), 1195-1209, 2013
The histone-like NF-Y is a bifunctional transcription factor
M Ceribelli, D Dolfini, D Merico, R Gatta, AM Vigano, G Pavesi, ...
Molecular and cellular biology 28 (6), 2047-2058, 2008
SpliceAid-F: a database of human splicing factors and their RNA-binding sites
M Giulietti, F Piva, M D’Antonio, P D’Onorio De Meo, D Paoletti, ...
Nucleic acids research 41 (D1), D125-D131, 2013
In silico representation and discovery of transcription factor binding sites
G Pavesi, G Mauri, G Pesole
Briefings in bioinformatics 5 (3), 217-236, 2004
miR-17-92 fine-tunes MYC expression and function to ensure optimal B cell lymphoma growth
M Mihailovich, M Bremang, V Spadotto, D Musiani, E Vitale, G Varano, ...
Nature communications 6 (1), 8725, 2015
MeCP2 post-translational modifications: a mechanism to control its involvement in synaptic plasticity and homeostasis?
E Bellini, G Pavesi, I Barbiero, A Bergo, C Chandola, MS Nawaz, ...
Front Cell Neurosci. 8 (236), 110, 2014
MoD Tools: regulatory motif discovery in nucleotide sequences from co-regulated or homologous genes
G Pavesi, P Mereghetti, F Zambelli, M Stefani, G Mauri, G Pesole
Nucleic acids research 34 (suppl_2), W566-W570, 2006
PscanChIP: finding over-represented transcription factor-binding site motifs and their correlations in sequences from ChIP-Seq experiments
F Zambelli, G Pesole, G Pavesi
Nucleic acids research 41 (W1), W535-W543, 2013
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