| The Genomes of Oryza sativa: A History of Duplications J Yu, J Wang, W Lin, S Li, H Li, J Zhou, P Ni, W Dong, S Hu, C Zeng, ... PLoS biology 3 (2), e38, 2005 | 1030 | 2005 |
| Pseudomonas aeruginosa uses a cyclic‐di‐GMP‐regulated adhesin to reinforce the biofilm extracellular matrix BR Borlee, AD Goldman, K Murakami, R Samudrala, DJ Wozniak, ... Molecular microbiology 75 (4), 827-842, 2010 | 672 | 2010 |
| Data access for the 1,000 Plants (1KP) project N Matasci, LH Hung, Z Yan, EJ Carpenter, NJ Wickett, S Mirarab, ... Gigascience 3 (1), 2047-217X-3-17, 2014 | 595 | 2014 |
| An all-atom distance-dependent conditional probability discriminatory function for protein structure prediction R Samudrala, J Moult Journal of molecular biology 275 (5), 895-916, 1998 | 581 | 1998 |
| Decoys ‘R’Us: a database of incorrect conformations to improve protein structure prediction R Samudrala, M Levitt Protein science 9 (7), 1399-1401, 2000 | 266 | 2000 |
| Accurate prediction of secreted substrates and identification of a conserved putative secretion signal for type III secretion systems R Samudrala, F Heffron, JE McDermott PLoS pathogens 5 (4), e1000375, 2009 | 243 | 2009 |
| Ab initio construction of protein tertiary structures using a hierarchical approach Y Xia, ES Huang, M Levitt, R Samudrala Journal of molecular biology 300 (1), 171-185, 2000 | 220 | 2000 |
| A graph-theoretic algorithm for comparative modeling of protein structure R Samudrala, J Moult Journal of molecular biology 279 (1), 287-302, 1998 | 211 | 1998 |
| Neutral evolution of ‘non-coding’complementary DNAs J Wang, J Zhang, H Zheng, J Li, D Liu, H Li, R Samudrala, J Yu, ... Nature 431 (7010), 1-2, 2004 | 204 | 2004 |
| A novel knowledge-based approach to design inorganic-binding peptides EE Oren, C Tamerler, D Sahin, M Hnilova, UOS Seker, M Sarikaya, ... Bioinformatics 23 (21), 2816-2822, 2007 | 202 | 2007 |
| Genes for the cytoskeletal protein tubulin in the bacterial genus Prosthecobacter C Jenkins, R Samudrala, I Anderson, BP Hedlund, G Petroni, ... Proceedings of the National Academy of Sciences 99 (26), 17049-17054, 2002 | 201 | 2002 |
| Novel paradigms for drug discovery: computational multitarget screening E Jenwitheesuk, JA Horst, KL Rivas, WC Van Voorhis, R Samudrala Trends in pharmacological sciences 29 (2), 62-71, 2008 | 154 | 2008 |
| Caries induced cytokine network in the odontoblast layer of human teeth OV Horst, JA Horst, R Samudrala, BA Dale BMC immunology 12, 1-13, 2011 | 150 | 2011 |
| Ab initio protein structure prediction using a combined hierarchical approach R Samudrala, Y Xia, E Huang, M Levitt Proteins: Structure, Function, and Bioinformatics 37 (S3), 194-198, 1999 | 148 | 1999 |
| Computational prediction of type III and IV secreted effectors in gram-negative bacteria JE McDermott, A Corrigan, E Peterson, C Oehmen, G Niemann, ... Infection and immunity 79 (1), 23-32, 2011 | 140 | 2011 |
| Structural polymorphism and diversifying selection on the pregnancy malaria vaccine candidate VAR2CSA J Bockhorst, F Lu, JH Janes, J Keebler, B Gamain, P Awadalla, X Su, ... Molecular and biochemical parasitology 155 (2), 103-112, 2007 | 132 | 2007 |
| Ab initio fold prediction of small helical proteins using distance geometry and knowledge-based scoring functions ES Huang, R Samudrala, JW Ponder Journal of molecular biology 290 (1), 267-281, 1999 | 115 | 1999 |
| Structural optimization and de novo design of dengue virus entry inhibitory peptides JM Costin, E Jenwitheesuk, SM Lok, E Hunsperger, KA Conrads, ... PLoS neglected tropical diseases 4 (6), e721, 2010 | 114 | 2010 |
| Incorporating background frequency improves entropy-based residue conservation measures K Wang, R Samudrala BMC bioinformatics 7, 1-8, 2006 | 113 | 2006 |
| Improvement in protein functional site prediction by distinguishing structural and functional constraints on protein family evolution using computational design G Cheng, B Qian, R Samudrala, D Baker Nucleic Acids Research 33 (18), 5861-5867, 2005 | 112 | 2005 |
Jason McDermottScientist Pacific Northwest National LaboratoryVerified email at pnl.gov
