Tade Souaiaia
Tade Souaiaia
Professor at Suny Downstate University
Verified email at
Cited by
Cited by
PerM: efficient mapping of short sequencing reads with periodic full sensitive spaced seeds
Y Chen, T Souaiaia, T Chen
Bioinformatics 25 (19), 2514-2521, 2009
Spatiotemporal profile of postsynaptic interactomes integrates components of complex brain disorders
J Li, W Zhang, H Yang, DP Howrigan, B Wilkinson, T Souaiaia, ...
Nature neuroscience 20 (8), 1150-1161, 2017
Whole‐genome sequencing of two North American Drosophila melanogaster populations reveals genetic differentiation and positive selection
D Campo, K Lehmann, C Fjeldsted, T Souaiaia, J Kao, SV Nuzhdin
Molecular ecology 22 (20), 5084-5097, 2013
Deconvolution of transcriptional networks identifies TCF4 as a master regulator in schizophrenia
A Doostparast Torshizi, C Armoskus, H Zhang, MP Forrest, S Zhang, ...
Science advances 5 (9), eaau4139, 2019
Effect of RNA integrity on uniquely mapped reads in RNA-Seq
EA Chen, T Souaiaia, JS Herstein, OV Evgrafov, VN Spitsyna, ...
BMC research notes 7, 1-3, 2014
Assessing characteristics of RNA amplification methods for single cell RNA sequencing
HR Dueck, R Ai, A Camarena, B Ding, R Dominguez, OV Evgrafov, ...
BMC genomics 17, 1-22, 2016
RseqFlow: workflows for RNA-Seq data analysis
Y Wang, G Mehta, R Mayani, J Lu, T Souaiaia, Y Chen, A Clark, HJ Yoon, ...
Bioinformatics 27 (18), 2598-2600, 2011
System, method and device for automatic noninvasive screening for diabetes and pre-diabetes
J Wakizaka, W To, T Souaiaia
US Patent 9,364,147, 2016
Dorsal amygdala neurotrophin-3 decreases anxious temperament in primates
AS Fox, T Souaiaia, JA Oler, R Kovner, JMH Kim, J Nguyen, DA French, ...
Biological psychiatry 86 (12), 881-889, 2019
Gene expression in patient-derived neural progenitors implicates WNT5A signaling in the etiology of schizophrenia
OV Evgrafov, C Armoskus, BB Wrobel, VN Spitsyna, T Souaiaia, ...
Biological Psychiatry 88 (3), 236-247, 2020
Transcriptional profiling of primate central nucleus of the amygdala neurons to understand the molecular underpinnings of early-life anxious temperament
R Kovner, T Souaiaia, AS Fox, DA French, CE Goss, PH Roseboom, ...
Biological psychiatry 88 (8), 638-648, 2020
ComB: SNP calling and mapping analysis for color and nucleotide space platforms
T Souaiaia, Z Frazier, T Chen
Journal of Computational Biology 18 (6), 795-807, 2011
Non-coding RNAs derived from an alternatively spliced REST transcript (REST-003) regulate breast cancer invasiveness
NS Lee, OV Evgrafov, T Souaiaia, A Bonyad, J Herstein, JY Lee, J Kim, ...
Scientific reports 5 (1), 11207, 2015
Robust RNA-Seq of aRNA-amplified single cell material collected by patch clamp
JMH Kim, A Camarena, C Walker, MY Lin, V Wolseley, T Souaiaia, ...
Scientific reports 10 (1), 1979, 2020
BridgePRS: A powerful trans-ancestry Polygenic Risk Score method
C Hoggart, SW Choi, J García-González, T Souaiaia, M Preuss, P O’Reilly
BioRxiv, 2023.02. 17.528938, 2023
FadE: whole genome methylation analysis for multiple sequencing platforms
T Souaiaia, Z Zhang, T Chen
Nucleic Acids Research 41 (1), e14-e14, 2013
Gene expression in the primate orbitofrontal cortex related to anxious temperament
MM Kenwood, T Souaiaia, R Kovner, AS Fox, DA French, JA Oler, ...
Proceedings of the National Academy of Sciences 120 (49), e2305775120, 2023
Deconvolution of transcriptional networks identifies TCF4 as a master regulator in schizophrenia
AD Torshizi, C Armoskus, S Zhang, H Zhang, T Souaiaia, MP Forrest, ...
BioRxiv, 133363, 2017
Gene expression in patient-derived neural progenitors provide insights into neurodevelopmental aspects of schizophrenia
OV Evgrafov, C Armoskus, BB Wrobel, VN Spitsyna, T Souaiaia, ...
bioRxiv, 2017
A Mathematical Model of the Environmental Effects on Long Jump Performance of World Class Athletes
T Souaiaia, J Mureika
International Journal of Computer Science in Sport 11, 16-28, 2012
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