| PerM: efficient mapping of short sequencing reads with periodic full sensitive spaced seeds Y Chen, T Souaiaia, T Chen Bioinformatics 25 (19), 2514-2521, 2009 | 154 | 2009 |
| Spatiotemporal profile of postsynaptic interactomes integrates components of complex brain disorders J Li, W Zhang, H Yang, DP Howrigan, B Wilkinson, T Souaiaia, ... Nature neuroscience 20 (8), 1150-1161, 2017 | 117 | 2017 |
| Deconvolution of transcriptional networks identifies TCF4 as a master regulator in schizophrenia A Doostparast Torshizi, C Armoskus, H Zhang, MP Forrest, S Zhang, ... Science advances 5 (9), eaau4139, 2019 | 61 | 2019 |
| Whole‐genome sequencing of two North American Drosophila melanogaster populations reveals genetic differentiation and positive selection D Campo, K Lehmann, C Fjeldsted, T Souaiaia, J Kao, SV Nuzhdin Molecular ecology 22 (20), 5084-5097, 2013 | 59 | 2013 |
| Effect of RNA integrity on uniquely mapped reads in RNA-Seq EA Chen, T Souaiaia, JS Herstein, OV Evgrafov, VN Spitsyna, ... BMC research notes 7, 1-3, 2014 | 43 | 2014 |
| RseqFlow: workflows for RNA-Seq data analysis Y Wang, G Mehta, R Mayani, J Lu, T Souaiaia, Y Chen, A Clark, HJ Yoon, ... Bioinformatics 27 (18), 2598-2600, 2011 | 41 | 2011 |
| Assessing characteristics of RNA amplification methods for single cell RNA sequencing HR Dueck, R Ai, A Camarena, B Ding, R Dominguez, OV Evgrafov, ... BMC genomics 17, 1-22, 2016 | 40 | 2016 |
| System, method and device for automatic noninvasive screening for diabetes and pre-diabetes J Wakizaka, W To, T Souaiaia US Patent 9,364,147, 2016 | 39 | 2016 |
| Dorsal amygdala neurotrophin-3 decreases anxious temperament in primates AS Fox, T Souaiaia, JA Oler, R Kovner, JMH Kim, J Nguyen, DA French, ... Biological psychiatry 86 (12), 881-889, 2019 | 37 | 2019 |
| Gene expression in patient-derived neural progenitors implicates WNT5A signaling in the etiology of schizophrenia OV Evgrafov, C Armoskus, BB Wrobel, VN Spitsyna, T Souaiaia, ... Biological psychiatry 88 (3), 236-247, 2020 | 35 | 2020 |
| Transcriptional profiling of primate central nucleus of the amygdala neurons to understand the molecular underpinnings of early-life anxious temperament R Kovner, T Souaiaia, AS Fox, DA French, CE Goss, PH Roseboom, ... Biological psychiatry 88 (8), 638-648, 2020 | 25 | 2020 |
| BridgePRS leverages shared genetic effects across ancestries to increase polygenic risk score portability CJ Hoggart, SW Choi, J García-González, T Souaiaia, M Preuss, ... Nature Genetics 56 (1), 180-186, 2024 | 18 | 2024 |
| ComB: SNP calling and mapping analysis for color and nucleotide space platforms T Souaiaia, Z Frazier, T Chen Journal of Computational Biology 18 (6), 795-807, 2011 | 17 | 2011 |
| Non-coding RNAs derived from an alternatively spliced REST transcript (REST-003) regulate breast cancer invasiveness NS Lee, OV Evgrafov, T Souaiaia, A Bonyad, J Herstein, JY Lee, J Kim, ... Scientific reports 5 (1), 11207, 2015 | 13 | 2015 |
| BridgePRS: A powerful trans-ancestry Polygenic Risk Score method C Hoggart, SW Choi, J García-González, T Souaiaia, M Preuss, P O’Reilly BioRxiv, 2023.02. 17.528938, 2023 | 12 | 2023 |
| Robust RNA-Seq of aRNA-amplified single cell material collected by patch clamp JMH Kim, A Camarena, C Walker, MY Lin, V Wolseley, T Souaiaia, ... Scientific reports 10 (1), 1979, 2020 | 8 | 2020 |
| Gene expression in the primate orbitofrontal cortex related to anxious temperament MM Kenwood, T Souaiaia, R Kovner, AS Fox, DA French, JA Oler, ... Proceedings of the National Academy of Sciences 120 (49), e2305775120, 2023 | 6 | 2023 |
| FadE: whole genome methylation analysis for multiple sequencing platforms T Souaiaia, Z Zhang, T Chen Nucleic Acids Research 41 (1), e14-e14, 2013 | 6 | 2013 |
| Deconvolution of transcriptional networks identifies TCF4 as a master regulator in schizophrenia AD Torshizi, C Armoskus, S Zhang, H Zhang, T Souaiaia, MP Forrest, ... BioRxiv, 133363, 2017 | 5 | 2017 |
| Gene expression in patient-derived neural progenitors provide insights into neurodevelopmental aspects of schizophrenia OV Evgrafov, C Armoskus, BB Wrobel, VN Spitsyna, T Souaiaia, ... bioRxiv, 2017 | 3 | 2017 |
Ned H. KalinChair of Psychiatry and Hedberg Professor, University of Wisconsin-MadisonVerified email at wisc.edu
