Johannes Michael Freudenberg
Johannes Michael Freudenberg
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Experimental comparison and cross-validation of the Affymetrix and Illumina gene expression analysis platforms
M Barnes, J Freudenberg, S Thompson, B Aronow, P Pavlidis
Nucleic acids research 33 (18), 5914-5923, 2005
Histone-fold domain protein NF-Y promotes chromatin accessibility for cell type-specific master transcription factors
AJ Oldfield, P Yang, AE Conway, S Cinghu, JM Freudenberg, ...
Molecular cell 55 (5), 708-722, 2014
Fip1 regulates mRNA alternative polyadenylation to promote stem cell self‐renewal
B Lackford, C Yao, GM Charles, L Weng, X Zheng, EA Choi, X Xie, J Wan, ...
The EMBO journal 33 (8), 878-889, 2014
Diverse stresses dramatically alter genome-wide p53 binding and transactivation landscape in human cancer cells
D Menendez, TA Nguyen, JM Freudenberg, VJ Mathew, CW Anderson, ...
Nucleic acids research 41 (15), 7286-7301, 2013
Acute depletion of Tet1-dependent 5-hydroxymethylcytosine levels impairs LIF/Stat3 signaling and results in loss of embryonic stem cell identity
JM Freudenberg, S Ghosh, BL Lackford, S Yellaboina, X Zheng, R Li, ...
Nucleic acids research 40 (8), 3364-3377, 2012
Human and mouse skeletal muscle stem cells: convergent and divergent mechanisms of myogenesis
A Bareja, JA Holt, G Luo, C Chang, J Lin, AC Hinken, JM Freudenberg, ...
PloS one 9 (2), e90398, 2014
Retinoic acid-related orphan receptor γ (RORγ): a novel participant in the diurnal regulation of hepatic gluconeogenesis and insulin sensitivity
Y Takeda, HS Kang, J Freudenberg, LM DeGraff, R Jothi, AM Jetten
PLoS genetics 10 (5), e1004331, 2014
Ldb1-nucleated transcription complexes function as primary mediators of global erythroid gene activation
LQ Li, J Freudenberg, K Cui, R Dale, SH Song, A Dean, K Zhao, R Jothi, ...
Blood, The Journal of the American Society of Hematology 121 (22), 4575-4585, 2013
Effect of Roux-en-Y gastric bypass surgery on bile acid metabolism in normal and obese diabetic rats
HY Bhutta, N Rajpal, W White, JM Freudenberg, Y Liu, J Way, D Rajpal, ...
PloS one 10 (3), e0122273, 2015
Clean: Clustering enrichment analysis
JM Freudenberg, VK Joshi, Z Hu, M Medvedovic
BMC bioinformatics 10, 1-15, 2009
Cnot1, Cnot2, and Cnot3 maintain mouse and human ESC identity and inhibit extraembryonic differentiation
X Zheng, R Dumitru, BL Lackford, JM Freudenberg, AP Singh, TK Archer, ...
Stem cells 30 (5), 910-922, 2012
The epigenetic signature of systemic insulin resistance in obese women
P Arner, AS Sahlqvist, I Sinha, H Xu, X Yao, D Waterworth, D Rajpal, ...
Diabetologia 59, 2393-2405, 2016
Network-based identification and prioritization of key regulators of coronary artery disease loci
Y Zhao, J Chen, JM Freudenberg, Q Meng, CARDIoGRAM Consortium, ...
Arteriosclerosis, thrombosis, and vascular biology 36 (5), 928-941, 2016
Evaluation of analytical methods for connectivity map data
J Cheng, Q Xie, V Kumar, M Hurle, JM Freudenberg, L Yang, P Agarwal
Biocomputing 2013, 5-16, 2013
Expression profiling of human donor lungs to understand primary graft dysfunction after lung transplantation
M Ray, S Dharmarajan, J Freudenberg, W Zhang, GA Patterson
American Journal of Transplantation 7 (10), 2396-2405, 2007
A semi-parametric Bayesian model for unsupervised differential co-expression analysis
JM Freudenberg, S Sivaganesan, M Wagner, M Medvedovic
BMC bioinformatics 11, 1-15, 2010
Pharmacological SIRT1 activation improves mortality and markedly alters transcriptional profiles that accompany experimental sepsis
SM Opal, JL Ellis, V Suri, JM Freudenberg, GP Vlasuk, Y Li, AB Chahin, ...
Shock 45 (4), 411-418, 2016
Assessing colonic exposure, safety, and clinical activity of SRT2104, a novel oral SIRT1 activator, in patients with mild to moderate ulcerative colitis
BE Sands, S Joshi, J Haddad, JM Freudenberg, DE Oommen, ...
Inflammatory bowel diseases 22 (3), 607-614, 2016
Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes
JL Aponte, MN Chiano, LM Yerges-Armstrong, DA Hinds, C Tian, A Gupta, ...
Human Molecular Genetics 27 (15), 2762-2772, 2018
A phase I randomized controlled trial to evaluate safety and clinical effect of topically applied GSK2981278 ointment in a psoriasis plaque test
EG Kang, S Wu, A Gupta, YL von Mackensen, H Siemetzki, ...
British Journal of Dermatology 178 (6), 1427-1429, 2018
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