Sean Davis

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Paul MeltzerCenter for Cancer Research, National Cancer InstituteVerified email at nih.gov
Levi WaldronCity University of New York Graduate School of Public Health and Health PolicyVerified email at sph.cuny.edu
Sven BilkeIllumina Inc.Verified email at illumina.com
Kasper D. HansenDepartment of Biostatistics, Johns Hopkins UniversityVerified email at jhsph.edu
Gregory CrawfordDuke UniversityVerified email at duke.edu
Wolfgang HuberEMBL - European Molecular Biology LaboratoryVerified email at embl.org
Michelle HolkoAirfinity, ICSI Berkeley, Defensive BioTech LLCVerified email at icsi.berkeley.edu
Daniel E. WeeksProfessor of Human Genetics and Biostatistics, University of PittsburghVerified email at pitt.edu
Tanya BarrettNCBI, NLM, NIHVerified email at ncbi.nlm.nih.gov
Marcel M. Ramos PérezCUNY Graduate School of Public Health and Health PolicyVerified email at sph.cuny.edu
M. Raza ZaidiFels Cancer Institute for Personalized Medicine, Lewis Katz School of Medicine at Temple UniversityVerified email at temple.edu
Yardena SamuelsWeizmann Institute of ScienceVerified email at weizmann.ac.il
Zhiping WengProf & Chair, Department of Genomics and Computational Biology, UMASS Medical SchoolVerified email at umassmed.edu
Myriem BoufraqechPostdoc NCIVerified email at nih.gov
Theresa GuoUniversity of California, San DiegoVerified email at health.ucsd.edu
C. Jimmy LinJohns Hopkins School of MedicineVerified email at jhmi.edu
Frances NoonanThe George Washington UniversityVerified email at email.gwu.edu
Stephen M HewittMedical Officer, Laboratory of Pathology, National Cancer InstituteVerified email at helix.nih.gov
Peter ScacheriProfessor, Case Western Reserve UniversityVerified email at case.edu
Javed KhanDeputy Branch Chief Genetics Branch, Senior Investigator, Center for Cancer Research, NCI, NIHVerified email at mail.nih.gov

Sean Davis

University of Colorado

Verified email at cuanschutz.edu - Homepage

Bioinformatics Cancer Genomics Pediatric Oncology Data Science


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NCBI GEO: archive for functional genomics data sets—update T Barrett, SE Wilhite, P Ledoux, C Evangelista, IF Kim, M Tomashevsky, ... Nucleic acids research 41 (D1), D991-D995, 2012	9823	2012
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project Management Group Liefer Laura A. 51 Wetterstrand Kris A. 51 Good Peter J. 51 ... nature 447 (7146), 799-816, 2007	6134	2007
Orchestrating high-throughput genomic analysis with Bioconductor W Huber, VJ Carey, R Gentleman, S Anders, M Carlson, BS Carvalho, ... Nature methods 12 (2), 115-121, 2015	3700	2015
GEOquery: a bridge between the Gene Expression Omnibus (GEO) and BioConductor S Davis, PS Meltzer Bioinformatics 23 (14), 1846-1847, 2007	2736	2007
BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis S Durinck, Y Moreau, A Kasprzyk, S Davis, B De Moor, A Brazma, ... Bioinformatics 21 (16), 3439-3440, 2005	2335	2005
Rare structural variants disrupt multiple genes in neurodevelopmental pathways in schizophrenia T Walsh, JM McClellan, SE McCarthy, AM Addington, SB Pierce, ... Science 320 (5875), 539, 2008	2170	2008
High-resolution mapping and characterization of open chromatin across the genome AP Boyle, S Davis, HP Shulha, P Meltzer, EH Margulies, Z Weng, ... Cell 132 (2), 311-322, 2008	1795	2008
Pan-cancer genome and transcriptome analyses of 1,699 paediatric leukaemias and solid tumours X Ma, YU Liu, Y Liu, LB Alexandrov, MN Edmonson, C Gawad, X Zhou, ... Nature 555 (7696), 371-376, 2018	829	2018
A single IGF1 allele is a major determinant of small size in dogs NB Sutter, CD Bustamante, K Chase, MM Gray, K Zhao, L Zhu, ... Science 316 (5821), 112-115, 2007	800	2007
RCircos: an R package for Circos 2D track plots H Zhang, P Meltzer, S Davis BMC bioinformatics 14, 1-5, 2013	683	2013
Genome-wide mapping of DNase hypersensitive sites using massively parallel signature sequencing (MPSS) GE Crawford, IE Holt, J Whittle, BD Webb, D Tai, S Davis, EH Margulies, ... Genome research 16 (1), 123-131, 2006	626	2006
Exome sequencing identifies GRIN2A as frequently mutated in melanoma X Wei, V Walia, JC Lin, JK Teer, TD Prickett, J Gartner, S Davis, ... Nature genetics 43 (5), 442-446, 2011	595	2011
Gene expression profiling of human sarcomas: insights into sarcoma biology K Baird, S Davis, CR Antonescu, UL Harper, RL Walker, Y Chen, ... Cancer research 65 (20), 9226-9235, 2005	422	2005
Super-enhancers delineate disease-associated regulatory nodes in T cells G Vahedi, Y Kanno, Y Furumoto, K Jiang, SCJ Parker, MR Erdos, ... Nature 520 (7548), 558-562, 2015	388	2015
The exomes of the NCI-60 panel: a genomic resource for cancer biology and systems pharmacology OD Abaan, EC Polley, SR Davis, YJ Zhu, S Bilke, RL Walker, M Pineda, ... Cancer research 73 (14), 4372-4382, 2013	376	2013
Interaction of the glucocorticoid receptor with the chromatin landscape S John, PJ Sabo, TA Johnson, MH Sung, SC Biddie, SL Lightman, ... Molecular cell 29 (5), 611-624, 2008	370	2008
Interferon-γ links ultraviolet radiation to melanomagenesis in mice MR Zaidi, S Davis, FP Noonan, C Graff-Cherry, TS Hawley, RL Walker, ... Nature 469 (7331), 548-553, 2011	340	2011
Epigenomic alterations and gene expression profiles in respiratory epithelia exposed to cigarette smoke condensate F Liu, JK Killian, M Yang, RL Walker, JA Hong, M Zhang, S Davis, ... Oncogene 29 (25), 3650-3664, 2010	330	2010
High prevalence of MAP2K1 mutations in variant and IGHV4-34–expressing hairy-cell leukemias JJ Waterfall, E Arons, RL Walker, M Pineda, L Roth, JK Killian, OD Abaan, ... Nature genetics 46 (1), 8-10, 2014	309	2014
Canine tumor cross-species genomics uncovers targets linked to osteosarcoma progression M Paoloni, S Davis, S Lana, S Withrow, L Sangiorgi, P Picci, S Hewitt, ... BMC genomics 10, 1-13, 2009	304	2009

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