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Elana J Fertig
Elana J Fertig
Professor of Oncology Biostatistics and Bioinformatics, Sidney Kimmel Comprehensive Cancer
Verified email at jhmi.edu - Homepage
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Cited by
Cited by
Year
Functional normalization of 450k methylation array data improves replication in large cancer studies
JP Fortin, A Labbe, M Lemire, BW Zanke, TJ Hudson, EJ Fertig, ...
Genome biology 15 (11), 503, 2014
8182014
sva: Surrogate variable analysis
JT Leek, WE Johnson, HS Parker, EJ Fertig, AE Jaffe, JD Storey, Y Zhang, ...
R package version 3 (0), 882-883, 2019
4702019
p16 protein expression and human papillomavirus status as prognostic biomarkers of nonoropharyngeal head and neck squamous cell carcinoma
CH Chung, Q Zhang, CS Kong, J Harris, EJ Fertig, PM Harari, D Wang, ...
Journal of clinical oncology 32 (35), 3930, 2014
4162014
Single-cell RNA-seq analysis of retinal development identifies NFI factors as regulating mitotic exit and late-born cell specification
BS Clark, GL Stein-O’Brien, F Shiau, GH Cannon, E Davis-Marcisak, ...
Neuron 102 (6), 1111-1126. e5, 2019
3502019
Activation of the NOTCH Pathway in Head and Neck Cancer
W Sun, DA Gaykalova, MF Ochs, E Mambo, D Arnaoutakis, Y Liu, M Loyo, ...
Cancer research 74 (4), 1091-1104, 2014
2702014
Inferring causal molecular networks: empirical assessment through a community-based effort
SM Hill, LM Heiser, T Cokelaer, M Unger, NK Nesser, DE Carlin, Y Zhang, ...
Nature methods 13 (4), 310-318, 2016
2412016
Enter the matrix: factorization uncovers knowledge from omics
GL Stein-O’Brien, R Arora, AC Culhane, AV Favorov, LX Garmire, ...
Trends in Genetics 34 (10), 790-805, 2018
2212018
Single-cell analysis of human retina identifies evolutionarily conserved and species-specific mechanisms controlling development
Y Lu, F Shiau, W Yi, S Lu, Q Wu, JD Pearson, A Kallman, S Zhong, ...
Developmental cell 53 (4), 473-491. e9, 2020
1952020
Programmed cell death ligand-1 (PD-L1) and CD8 expression profiling identify an immunologic subtype of pancreatic ductal adenocarcinomas with favorable survival
L Danilova, WJ Ho, Q Zhu, T Vithayathil, A De Jesus-Acosta, NS Azad, ...
Cancer immunology research 7 (6), 886-895, 2019
1952019
Neoadjuvant cabozantinib and nivolumab convert locally advanced hepatocellular carcinoma into resectable disease with enhanced antitumor immunity
WJ Ho, Q Zhu, J Durham, A Popovic, S Xavier, J Leatherman, A Mohan, ...
Nature Cancer 2 (9), 891-903, 2021
192*2021
Breast cancer cells condition lymphatic endothelial cells within pre-metastatic niches to promote metastasis
E Lee, EJ Fertig, K Jin, S Sukumar, NB Pandey, AS Popel
Nature communications 5 (1), 4715, 2014
1852014
Key tumor suppressor genes inactivated by “greater promoter” methylation and somatic mutations in head and neck cancer
R Guerrero-Preston, C Michailidi, L Marchionni, CR Pickering, ...
Epigenetics 9 (7), 1031-1046, 2014
1712014
A comparative study of 4D-VAR and a 4D ensemble Kalman filter: Perfect model simulations with Lorenz-96
EJ Fertig, J Harlim, BR Hunt
Tellus A: Dynamic Meteorology and Oceanography 59 (1), 96-100, 2007
1622007
A tumor-derived type III collagen-rich ECM niche regulates tumor cell dormancy
JS Di Martino, AR Nobre, C Mondal, I Taha, EF Farias, EJ Fertig, A Naba, ...
Nature cancer 3 (1), 90-107, 2022
1542022
Targeted sequencing reveals clonal genetic changes in the progression of early lung neoplasms and paired circulating DNA
E Izumchenko, X Chang, M Brait, E Fertig, LT Kagohara, A Bedi, ...
Nature communications 6 (1), 8258, 2015
1502015
Decomposing cell identity for transfer learning across cellular measurements, platforms, tissues, and species
GL Stein-O’Brien, BS Clark, T Sherman, C Zibetti, Q Hu, R Sealfon, S Liu, ...
Cell systems 8 (5), 395-411. e8, 2019
1402019
Aging-like spontaneous epigenetic silencing facilitates Wnt activation, stemness, and BrafV600E-induced tumorigenesis
Y Tao, B Kang, DA Petkovich, YR Bhandari, J In, G Stein-O'Brien, X Kong, ...
Cancer cell 35 (2), 315-328. e6, 2019
1312019
Epigenetic regulation of gene expression in cancer: techniques, resources and analysis
LT Kagohara, GL Stein-O’Brien, D Kelley, E Flam, HC Wick, LV Danilova, ...
Briefings in functional genomics 17 (1), 49-63, 2018
1222018
Preserving biological heterogeneity with a permuted surrogate variable analysis for genomics batch correction
HS Parker, JT Leek, AV Favorov, M Considine, X Xia, S Chavan, ...
Bioinformatics 30 (19), 2757-2763, 2014
1152014
shinyMethyl: interactive quality control of Illumina 450k DNA methylation arrays in R
JP Fortin, E Fertig, K Hansen
F1000Research 3, 2014
1092014
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