| Pan-cancer analysis of whole genomes Nature 578 (7793), 82-93, 2020 | 1936* | 2020 |
| Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes SC Dentro, I Leshchiner, K Haase, M Tarabichi, J Wintersinger, ... Cell 184 (8), 2239-2254. e39, 2021 | 362 | 2021 |
| THetA: inferring intra-tumor heterogeneity from high-throughput DNA sequencing data L Oesper, A Mahmoody, BJ Raphael Genome biology 14, 1-21, 2013 | 289 | 2013 |
| Identifying driver mutations in sequenced cancer genomes: computational approaches to enable precision medicine BJ Raphael, JR Dobson, L Oesper, F Vandin Genome medicine 6, 1-17, 2014 | 263 | 2014 |
| WordCloud: a Cytoscape plugin to create a visual semantic summary of networks L Oesper, D Merico, R Isserlin, GD Bader Source code for biology and medicine 6, 1-4, 2011 | 201 | 2011 |
| Reconstruction of clonal trees and tumor composition from multi-sample sequencing data M El-Kebir, L Oesper, H Acheson-Field, BJ Raphael Bioinformatics 31 (12), i62-i70, 2015 | 193 | 2015 |
| Inferring the mutational history of a tumor using multi-state perfect phylogeny mixtures M El-Kebir, G Satas, L Oesper, BJ Raphael Cell systems 3 (1), 43-53, 2016 | 151 | 2016 |
| Quantifying tumor heterogeneity in whole-genome and whole-exome sequencing data L Oesper, G Satas, BJ Raphael Bioinformatics 30 (24), 3532-3540, 2014 | 125 | 2014 |
| Reconstructing cancer genomes from paired-end sequencing data L Oesper, A Ritz, SJ Aerni, R Drebin, BJ Raphael BMC bioinformatics 13, 1-13, 2012 | 56 | 2012 |
| A consensus approach to infer tumor evolutionary histories K Govek, C Sikes, L Oesper Proceedings of the 2018 Acm international conference on bioinformatics …, 2018 | 47 | 2018 |
| Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples MH Bailey, WU Meyerson, LJ Dursi, LB Wang, G Dong, WW Liang, ... Nature communications 11 (1), 4748, 2020 | 44 | 2020 |
| Distance measures for tumor evolutionary trees Z DiNardo, K Tomlinson, A Ritz, L Oesper Bioinformatics 36 (7), 2090-2097, 2020 | 44 | 2020 |
| PCAWG Evolution and Heterogeneity Working Group and the PCAWG Consortium. Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes SC Dentro, I Leshchiner, K Haase, M Tarabichi, J Wintersinger, ... Cell 184 (8), 2239-54, 2021 | 30 | 2021 |
| Graphyc: Using consensus to infer tumor evolution K Govek, C Sikes, Y Zhou, L Oesper IEEE/ACM Transactions on Computational Biology and Bioinformatics 19 (1 …, 2020 | 10 | 2020 |
| Identifying simultaneous rearrangements in cancer genomes L Oesper, S Dantas, BJ Raphael Bioinformatics 34 (2), 346-352, 2018 | 8 | 2018 |
| p-Coloring classes of torus knots AL Breiland, L Oesper, L Taalman Missouri Journal of Mathematical Sciences 21 (2), 120-126, 2009 | 7 | 2009 |
| Open adjacencies and k-breaks: detecting simultaneous rearrangements in cancer genomes C Weinreb, L Oesper, BJ Raphael BMC genomics 15, 1-11, 2014 | 6 | 2014 |
| A weighted distance-based approach for deriving consensus tumor evolutionary trees Z Guang, M Smith-Erb, L Oesper Bioinformatics 39 (Supplement_1), i204–i212, 2023 | 4 | 2023 |
| Expanding undergraduate exposure to computer science subfields: Resources and lessons from a hands-on computational biology workshop L Oesper, A Vostinar Proceedings of the 51st ACM Technical Symposium on Computer Science …, 2020 | 4 | 2020 |
| Examining tumor phylogeny inference in noisy sequencing data K Tomlinson, L Oesper 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2018 | 4 | 2018 |
Ben RaphaelProfessor of Computer Science, Princeton UniversityVerified email at princeton.edu
