Ruriko Yoshida

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	All	Since 2019
Citations	2396	1076
h-index	23	16
i10-index	47	22

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Raymond HemmeckeProfessor for Combinatorial Optimization, Technische Universität MünchenVerified email at tum.de
Christopher L. SchardlProfessor of Plant Pathology, University of KentuckyVerified email at uky.edu
Chrysafis VogiatzisIndustrial and Enterprise Systems EngineeringVerified email at illinois.edu
Lior PachterBren Professor of Computational Biology, CaltechVerified email at caltech.edu
Raazesh SainudiinDepartment of Mathematics, Uppsala UniversityVerified email at math.uu.se
Abraham Martin del CampoConacyt Research Fellow, CIMATVerified email at cimat.mx
Jian ZhaoDeveloper at Microsoft CorporationVerified email at microsoft.com
Sen-ching Samson CheungIEEE Fellow. University of Kentucky and University of California Davis.Verified email at engr.uky.edu
Fabio RapalloAssociate Professor of Statistics, Universita' di GenovaVerified email at unige.it
Yuguo ChenProfessor of Statistics, University of Illinois at Urbana-ChampaignVerified email at illinois.edu
Eric M. O'NeillLabcorp DNA Identification Testing DivisionVerified email at labcorp.com
Kevin WoodsProfessor of Mathematics, Oberlin CollegeVerified email at oberlin.edu
Asger HobolthProfessor, Department of Mathematics, Aarhus UniversityVerified email at math.au.dk
Vadim ZipunnikovJohns Hopkins Bloomberg School of Public HealthVerified email at jhu.edu
Kai XuUniversity of NottinghamVerified email at nottingham.ac.uk
Matthias BeckMathematics, San Francisco State UniversityVerified email at sfsu.edu
Bruce ReznickProfessor of Mathematics, University of IllinoisVerified email at illinois.edu
Frühbis-Krüger, AnneLeibniz Universität HannoverVerified email at math.uni-hannover.de

Ruriko Yoshida

Naval Postgraduate School

Verified email at nps.edu - Homepage

Algebraic/Geometric Statistics


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Plant-symbiotic fungi as chemical engineers: multi-genome analysis of the Clavicipitaceae reveals dynamics of alkaloid loci CL Schardl, CA Young, U Hesse, SG Amyotte, K Andreeva, PJ Calie, ... PLoS genetics 9 (2), e1003323, 2013	443	2013
Effective lattice point counting in rational convex polytopes JA De Loera, R Hemmecke, J Tauzer, R Yoshida Journal of symbolic computation 38 (4), 1273-1302, 2004	314	2004
A novel test for host-symbiont codivergence indicates ancient origin of fungal endophytes in grasses CL Schardl, KD Craven, S Speakman, A Stromberg, A Lindstrom, ... Systematic Biology 57 (3), 483-498, 2008	146	2008
Approximate techniques in solving optimal camera placement problems J Zhao, R Yoshida, SS Cheung, D Haws International Journal of Distributed Sensor Networks 9 (11), 241913, 2013	87	2013
Tropical principal component analysis and its application to phylogenetics R Yoshida, L Zhang, X Zhang Bulletin of mathematical biology 81, 568-597, 2019	70	2019
Convexity in tree spaces B Lin, B Sturmfels, X Tang, R Yoshida SIAM Journal on Discrete Mathematics 31 (3), 2015-2038, 2017	59	2017
A generating function for all semi-magic squares and the volume of the Birkhoff polytope JA De Loera, F Liu, R Yoshida Journal of Algebraic Combinatorics 30, 113-139, 2009	55	2009
On the optimality of the neighbor-joining algorithm K Eickmeyer, P Huggins, L Pachter, R Yoshida Algorithms for Molecular Biology 3, 1-11, 2008	55	2008
Short rational functions for toric algebra and applications JA De Loera, D Haws, R Hemmecke, P Huggins, B Sturmfels, R Yoshida Journal of Symbolic Computation 38 (2), 959-973, 2004	54	2004
Principal component analysis and the locus of the Fréchet mean in the space of phylogenetic trees TMW Nye, X Tang, G Weyenberg, R Yoshida Biometrika 104 (4), 901-922, 2017	52	2017
kdetrees: non-parametric estimation of phylogenetic tree distributions G Weyenberg, PM Huggins, CL Schardl, DK Howe, R Yoshida Bioinformatics 30 (16), 2280-2287, 2014	51	2014
Efficiencies of the NJp, maximum likelihood, and Bayesian methods of phylogenetic construction for compositional and noncompositional genes R Yoshida, M Nei Molecular biology and evolution 33 (6), 1618-1624, 2016	47	2016
Indispensable monomials of toric ideals and Markov bases S Aoki, A Takemura, R Yoshida Journal of Symbolic Computation 43 (6-7), 490-507, 2008	45	2008
Beyond pairwise distances: neighbor-joining with phylogenetic diversity estimates D Levy, R Yoshida, L Pachter Molecular Biology and Evolution 23 (3), 491-498, 2006	45	2006
Optimality of the neighbor joining algorithm and faces of the balanced minimum evolution polytope DC Haws, TL Hodge, R Yoshida Bulletin of mathematical biology 73, 2627-2648, 2011	43	2011
Tropical Fermat--Weber points B Lin, R Yoshida SIAM Journal on Discrete Mathematics 32 (2), 1229-1245, 2018	38	2018
A user’s guide for latte v1. 1 JA De Loera, D Haws, R Hemmecke, P Huggins, J Tauzer, R Yoshida University of California, Davis, 2003	33*	2003
Computing holes in semi-groups and its applications to transportation problems R Hemmecke, A Takemura, R Yoshida arXiv preprint math/0607599, 2006	32	2006
Tropical principal component analysis on the space of phylogenetic trees R Page, R Yoshida, L Zhang Bioinformatics 36 (17), 4590-4598, 2020	30	2020
Tropical geometry of phylogenetic tree space: a statistical perspective A Monod, B Lin, R Yoshida, Q Kang arXiv preprint arXiv:1805.12400, 2018	30	2018

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