Nir Friedman

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Daphne KollerCEO and Founder, insitroVerified email at insitro.com
Moran YassourThe Hebrew University of JerusalemVerified email at mail.huji.ac.il
Oliver RandoProfessor of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical SchoolVerified email at umassmed.edu
Moises GoldszmidtDistinguished Engineer at AppleVerified email at apple.com
Ido AmitProfessor of Immunology, Weizmann Institute of ScienceVerified email at weizmann.ac.il
Joshua Z. LevinBroad Institute of MIT & HarvardVerified email at broadinstitute.org
Manfred GrabherrAssociate Professor, Inland Norway University of Applied SciencesVerified email at inn.no
Iftach NachmanAssociate Professor, Tel Aviv UniversityVerified email at tauex.tau.ac.il
Brian HaasBroad InstituteVerified email at broadinstitute.org
Lise GetoorDistinguished Professor of Computer Science & Engineering, University of California, Santa CruzVerified email at ucsc.edu
Tommy KaplanProfessor of Computer Science and Computational Biology, The Hebrew UniversityVerified email at cs.huji.ac.il
Eran SegalProfessor of Computer Science, Weizmann Institute of ScienceVerified email at weizmann.ac.il
Naftali KaminskiYale School of MedicineVerified email at yale.edu
N RhindBiochemistry, UMass Med SchoolVerified email at umassmed.edu
Assaf WeinerThe Weizmann InstitueVerified email at weizmann.ac.il
Naomi HabibHebrew University of Jerusalem IsraelVerified email at elsc.huji.ac.il
Joseph HalpernProfessor of Computer Science, Cornell UniversityVerified email at cs.cornell.edu
Dana Pe'erHoward Hughes Medical Institute / Sloan Kettering InstituteVerified email at mskcc.org
Gal ElidanHebrew University / GoogleVerified email at huji.ac.il
Zohar YakhiniFaculty Member, Computer Science at IDC HerzeliyaVerified email at idc.ac.il

Nir Friedman

Professor of Computer Science and Medicine, Hebrew University

Verified email at mail.huji.ac.il - Homepage

Computational Biology Systems Biology Chromatin Transcription cell-free DNA


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Full-length transcriptome assembly from RNA-Seq data without a reference genome MG Grabherr, BJ Haas, M Yassour, JZ Levin, DA Thompson, I Amit, ... Nature biotechnology 29 (7), 644-652, 2011	19776*	2011
Probabilistic graphical models: principles and techniques D Koller, N Friedman MIT press, 2009	11317	2009
De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis BJ Haas, A Papanicolaou, M Yassour, M Grabherr, PD Blood, J Bowden, ... Nature protocols 8 (8), 1494-1512, 2013	8050	2013
Bayesian network classifiers N Friedman, D Geiger, M Goldszmidt Machine learning 29, 131-163, 1997	7363	1997
Using Bayesian networks to analyze expression data N Friedman, M Linial, I Nachman, D Pe'er Proceedings of the fourth annual international conference on Computational …, 2000	4672	2000
Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data E Segal, M Shapira, A Regev, D Pe'er, D Botstein, D Koller, N Friedman Nature genetics 34 (2), 166-176, 2003	2209	2003
Inferring cellular networks using probabilistic graphical models N Friedman Science 303 (5659), 799, 2004	1628	2004
Image segmentation in video sequences: A probabilistic approach N Friedman, S Russell arXiv preprint arXiv:1302.1539, 2013	1531	2013
Perturb-Seq: dissecting molecular circuits with scalable single-cell RNA profiling of pooled genetic screens A Dixit, O Parnas, B Li, J Chen, CP Fulco, L Jerby-Arnon, ND Marjanovic, ... cell 167 (7), 1853-1866. e17, 2016	1493	2016
Paternally induced transgenerational environmental reprogramming of metabolic gene expression in mammals BR Carone, L Fauquier, N Habib, JM Shea, CE Hart, R Li, C Bock, C Li, ... Cell 143 (7), 1084-1096, 2010	1286	2010
Learning probabilistic relational models N Friedman, L Getoor, D Koller, A Pfeffer IJCAI 99, 1300-1309, 1999	1191	1999
Being Bayesian about network structure. A Bayesian approach to structure discovery in Bayesian networks N Friedman, D Koller Machine learning 50, 95-125, 2003	1152	2003
Tissue classification with gene expression profiles A Ben-Dor, L Bruhn, N Friedman, I Nachman, M Schummer, Z Yakhini Proceedings of the fourth annual international conference on Computational …, 2000	1107	2000
Single-cell RNA-seq reveals dynamic paracrine control of cellular variation AK Shalek, R Satija, J Shuga, JJ Trombetta, D Gennert, D Lu, P Chen, ... Nature 510 (7505), 363-369, 2014	1090	2014
Densely interconnected transcriptional circuits control cell states in human hematopoiesis N Novershtern, A Subramanian, LN Lawton, RH Mak, WN Haining, ... Cell 144 (2), 296-309, 2011	1077	2011
Context-specific independence in Bayesian networks C Boutilier, N Friedman, M Goldszmidt, D Koller arXiv preprint arXiv:1302.3562, 2013	1019	2013
The Bayesian structural EM algorithm N Friedman arXiv preprint arXiv:1301.7373, 2013	1003	2013
Comprehensive comparative analysis of strand-specific RNA sequencing methods JZ Levin, M Yassour, X Adiconis, C Nusbaum, DA Thompson, N Friedman, ... Nature methods 7 (9), 709-715, 2010	921	2010
Learning the structure of dynamic probabilistic networks N Friedman, K Murphy, S Russell arXiv preprint arXiv:1301.7374, 2013	911	2013
Learning Bayesian network structure from massive datasets: The" sparse candidate" algorithm N Friedman, I Nachman, D Pe'er arXiv preprint arXiv:1301.6696, 2013	901	2013

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