| ARACNE: an algorithm for the reconstruction of gene regulatory networks in a mammalian cellular context AA Margolin, I Nemenman, K Basso, C Wiggins, G Stolovitzky, RD Favera, ... BMC bioinformatics 7, 1-15, 2006 | 3202 | 2006 |
| Prediction of central nervous system embryonal tumour outcome based on gene expression SL Pomeroy, P Tamayo, M Gaasenbeek, LM Sturla, M Angelo, ... Nature 415 (6870), 436-442, 2002 | 2907 | 2002 |
| Wisdom of crowds for robust gene network inference D Marbach, JC Costello, R Küffner, NM Vega, RJ Prill, DM Camacho, ... Nature methods 9 (8), 796-804, 2012 | 1834 | 2012 |
| Reverse engineering of regulatory networks in human B cells K Basso, AA Margolin, G Stolovitzky, U Klein, R Dalla-Favera, A Califano Nature genetics 37 (4), 382-390, 2005 | 1672 | 2005 |
| Gene expression profiling of B cell chronic lymphocytic leukemia reveals a homogeneous phenotype related to memory B cells U Klein, Y Tu, GA Stolovitzky, M Mattioli, G Cattoretti, H Husson, ... The Journal of experimental medicine 194 (11), 1625-1638, 2001 | 1230 | 2001 |
| Revealing strengths and weaknesses of methods for gene network inference D Marbach, RJ Prill, T Schaffter, C Mattiussi, D Floreano, G Stolovitzky Proceedings of the national academy of sciences 107 (14), 6286-6291, 2010 | 887 | 2010 |
| A community effort to assess and improve drug sensitivity prediction algorithms JC Costello, LM Heiser, E Georgii, M Gönen, MP Menden, NJ Wang, ... Nature biotechnology 32 (12), 1202-1212, 2014 | 786 | 2014 |
| Critical assessment of automated flow cytometry data analysis techniques N Aghaeepour, G Finak, FlowCAP Consortium, Dream Consortium, ... Nature methods 10 (3), 228-238, 2013 | 676 | 2013 |
| Nanoscale lateral displacement arrays for the separation of exosomes and colloids down to 20 nm BH Wunsch, JT Smith, SM Gifford, C Wang, M Brink, RL Bruce, RH Austin, ... Nature nanotechnology 11 (11), 936-940, 2016 | 555 | 2016 |
| Transcriptional analysis of the B cell germinal center reaction U Klein, Y Tu, GA Stolovitzky, JL Keller, J Haddad Jr, V Miljkovic, ... Proceedings of the National Academy of Sciences 100 (5), 2639-2644, 2003 | 540 | 2003 |
| Towards a rigorous assessment of systems biology models: the DREAM3 challenges RJ Prill, D Marbach, J Saez-Rodriguez, PK Sorger, LG Alexopoulos, ... PloS one 5 (2), e9202, 2010 | 510 | 2010 |
| Dialogue on Reverse‐Engineering Assessment and Methods G Stolovitzky, DON Monroe, A Califano Annals of the New York Academy of Sciences 1115 (1), 1-22, 2007 | 458 | 2007 |
| A plausible model for the digital response of p53 to DNA damage L Ma, J Wagner, JJ Rice, W Hu, AJ Levine, GA Stolovitzky Proceedings of the National Academy of Sciences 102 (40), 14266-14271, 2005 | 425 | 2005 |
| Evaluation of methods for modeling transcription factor sequence specificity MT Weirauch, A Cote, R Norel, M Annala, Y Zhao, TR Riley, ... Nature biotechnology 31 (2), 126-134, 2013 | 409 | 2013 |
| Formation of regulatory patterns during signal propagation in a mammalian cellular network A Ma'ayan, SL Jenkins, S Neves, A Hasseldine, E Grace, B Dubin-Thaler, ... Science 309 (5737), 1078-1083, 2005 | 398 | 2005 |
| Evaluation of combined artificial intelligence and radiologist assessment to interpret screening mammograms T Schaffter, DSM Buist, CI Lee, Y Nikulin, D Ribli, Y Guan, W Lotter, Z Jie, ... JAMA network open 3 (3), e200265-e200265, 2020 | 366 | 2020 |
| Quantitative noise analysis for gene expression microarray experiments Y Tu, G Stolovitzky, U Klein Proceedings of the National Academy of Sciences 99 (22), 14031-14036, 2002 | 354 | 2002 |
| Identification of Hodgkin and Reed-Sternberg cell-specific genes by gene expression profiling R Küppers, U Klein, I Schwering, V Distler, A Bräuninger, G Cattoretti, ... The Journal of clinical investigation 111 (4), 529-537, 2003 | 343 | 2003 |
| Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen MP Menden, D Wang, MJ Mason, B Szalai, KC Bulusu, Y Guan, T Yu, ... Nature communications 10 (1), 2674, 2019 | 332* | 2019 |
| Combining tumor genome simulation with crowdsourcing to benchmark somatic single-nucleotide-variant detection AD Ewing, KE Houlahan, Y Hu, K Ellrott, C Caloian, TN Yamaguchi, ... Nature methods 12 (7), 623-630, 2015 | 330 | 2015 |
Andrea CalifanoColumbia Verified email at c2b2.columbia.edu
