| ARACNE: an algorithm for the reconstruction of gene regulatory networks in a mammalian cellular context AA Margolin, I Nemenman, K Basso, C Wiggins, G Stolovitzky, RD Favera, ... BMC bioinformatics 7, 1-15, 2006 | 2888 | 2006 |
| Prediction of central nervous system embryonal tumour outcome based on gene expression SL Pomeroy, P Tamayo, M Gaasenbeek, LM Sturla, M Angelo, ... Nature 415 (6870), 436-442, 2002 | 2808 | 2002 |
| Wisdom of crowds for robust gene network inference D Marbach, JC Costello, R Küffner, NM Vega, RJ Prill, DM Camacho, ... Nature methods 9 (8), 796-804, 2012 | 1621 | 2012 |
| Reverse engineering of regulatory networks in human B cells K Basso, AA Margolin, G Stolovitzky, U Klein, R Dalla-Favera, A Califano Nature genetics 37 (4), 382-390, 2005 | 1596 | 2005 |
| Gene expression profiling of B cell chronic lymphocytic leukemia reveals a homogeneous phenotype related to memory B cells U Klein, Y Tu, GA Stolovitzky, M Mattioli, G Cattoretti, H Husson, ... The Journal of experimental medicine 194 (11), 1625-1638, 2001 | 1175 | 2001 |
| Revealing strengths and weaknesses of methods for gene network inference D Marbach, RJ Prill, T Schaffter, C Mattiussi, D Floreano, G Stolovitzky Proceedings of the national academy of sciences 107 (14), 6286-6291, 2010 | 848 | 2010 |
| A community effort to assess and improve drug sensitivity prediction algorithms JC Costello, LM Heiser, E Georgii, M Gönen, MP Menden, NJ Wang, ... Nature biotechnology 32 (12), 1202-1212, 2014 | 666 | 2014 |
| Critical assessment of automated flow cytometry data analysis techniques N Aghaeepour, G Finak, FlowCAP Consortium, Dream Consortium, ... Nature methods 10 (3), 228-238, 2013 | 610 | 2013 |
| Transcriptional analysis of the B cell germinal center reaction U Klein, Y Tu, GA Stolovitzky, JL Keller, J Haddad Jr, V Miljkovic, ... Proceedings of the National Academy of Sciences 100 (5), 2639-2644, 2003 | 508 | 2003 |
| Towards a rigorous assessment of systems biology models: the DREAM3 challenges RJ Prill, D Marbach, J Saez-Rodriguez, PK Sorger, LG Alexopoulos, ... PloS one 5 (2), e9202, 2010 | 475 | 2010 |
| Nanoscale lateral displacement arrays for the separation of exosomes and colloids down to 20 nm BH Wunsch, JT Smith, SM Gifford, C Wang, M Brink, RL Bruce, RH Austin, ... Nature nanotechnology 11 (11), 936-940, 2016 | 442 | 2016 |
| Dialogue on Reverse‐Engineering Assessment and Methods G Stolovitzky, DON Monroe, A Califano Annals of the New York Academy of Sciences 1115 (1), 1-22, 2007 | 428 | 2007 |
| A plausible model for the digital response of p53 to DNA damage L Ma, J Wagner, JJ Rice, W Hu, AJ Levine, GA Stolovitzky Proceedings of the National Academy of Sciences 102 (40), 14266-14271, 2005 | 408 | 2005 |
| Formation of regulatory patterns during signal propagation in a mammalian cellular network A Ma'ayan, SL Jenkins, S Neves, A Hasseldine, E Grace, B Dubin-Thaler, ... Science 309 (5737), 1078-1083, 2005 | 385 | 2005 |
| Evaluation of methods for modeling transcription factor sequence specificity MT Weirauch, A Cote, R Norel, M Annala, Y Zhao, TR Riley, ... Nature biotechnology 31 (2), 126-134, 2013 | 365 | 2013 |
| Quantitative noise analysis for gene expression microarray experiments Y Tu, G Stolovitzky, U Klein Proceedings of the National Academy of Sciences 99 (22), 14031-14036, 2002 | 341 | 2002 |
| Identification of Hodgkin and Reed-Sternberg cell-specific genes by gene expression profiling R Küppers, U Klein, I Schwering, V Distler, A Bräuninger, G Cattoretti, ... The Journal of clinical investigation 111 (4), 529-537, 2003 | 321 | 2003 |
| Combining tumor genome simulation with crowdsourcing to benchmark somatic single-nucleotide-variant detection AD Ewing, KE Houlahan, Y Hu, K Ellrott, C Caloian, TN Yamaguchi, ... Nature methods 12 (7), 623-630, 2015 | 286 | 2015 |
| A community computational challenge to predict the activity of pairs of compounds M Bansal, J Yang, C Karan, MP Menden, JC Costello, H Tang, G Xiao, ... Nature biotechnology 32 (12), 1213-1222, 2014 | 266 | 2014 |
| Analysis of gene expression microarrays for phenotype classification. A Califano, G Stolovitzky, Y Tu Ismb 8, 75-85, 2000 | 256 | 2000 |
Andrea CalifanoColumbia Verified email at c2b2.columbia.edu
