| Everything you wanted to know about Markov State Models but were afraid to ask VS Pande, K Beauchamp, GR Bowman Methods 52 (1), 99-105, 2010 | 799 | 2010 |
| An introduction to markov state models and their application to long timescale molecular simulation GR Bowman, VS Pande, F Noé Springer, 2014 | 634 | 2014 |
| Molecular simulation of ab initio protein folding for a millisecond folder NTL9 (1− 39) VA Voelz, GR Bowman, K Beauchamp, VS Pande Journal of the American Chemical Society 132 (5), 1526-1528, 2010 | 628 | 2010 |
| Exploiting a natural conformational switch to engineer an interleukin-2/superkine/' AM Levin, DL Bates, AM Ring, C Krieg, JT Lin, L Su, I Moraga, ME Raeber, ... Nature 484 (7395), 529-533, 2012 | 569 | 2012 |
| The SARS-CoV-2 nucleocapsid protein is dynamic, disordered, and phase separates with RNA J Cubuk, JJ Alston, JJ Incicco, S Singh, MD Stuchell-Brereton, MD Ward, ... Nature Communications 12 (1), 1-17, 2021 | 518 | 2021 |
| Progress and challenges in the automated construction of Markov state models for full protein systems GR Bowman, KA Beauchamp, G Boxer, VS Pande The Journal of chemical physics 131, 124101, 2009 | 473 | 2009 |
| Cloud-based simulations on Google Exacycle reveal ligand modulation of GPCR activation pathways KJ Kohlhoff, D Shukla, M Lawrenz, GR Bowman, DE Konerding, D Belov, ... Nature Chemistry 6 (1), 15-21, 2014 | 455 | 2014 |
| MSMBuilder2: modeling conformational dynamics on the picosecond to millisecond scale KA Beauchamp, GR Bowman, TJ Lane, L Maibaum, IS Haque, VS Pande Journal of chemical theory and computation 7 (10), 3412-3419, 2011 | 428 | 2011 |
| Using generalized ensemble simulations and Markov state models to identify conformational states GR Bowman, X Huang, VS Pande Methods 49 (2), 197-201, 2009 | 352 | 2009 |
| Mechanistic and structural insight into the functional dichotomy between IL-2 and IL-15 AM Ring, JX Lin, D Feng, S Mitra, M Rickert, GR Bowman, VS Pande, P Li, ... Nature immunology 13 (12), 1187-1195, 2012 | 294 | 2012 |
| Equilibrium fluctuations of a single folded protein reveal a multitude of potential cryptic allosteric sites GR Bowman, PL Geissler Proceedings of the National Academy of Sciences 109 (29), 11681-11686, 2012 | 275 | 2012 |
| SARS-CoV-2 simulations go exascale to predict dramatic spike opening and cryptic pockets across the proteome MI Zimmerman, JR Porter, MD Ward, S Singh, N Vithani, A Meller, ... Nature chemistry 13 (7), 651-659, 2021 | 269* | 2021 |
| Protein folded states are kinetic hubs GR Bowman, VS Pande Proceedings of the National Academy of Sciences 107 (24), 10890-10895, 2010 | 254 | 2010 |
| Enhanced modeling via network theory: Adaptive sampling of markov state models GR Bowman, DL Ensign, VS Pande Journal of Chemical Theory and Computation 6 (3), 787-794, 2010 | 250 | 2010 |
| A role for both conformational selection and induced fit in ligand binding by the LAO protein DA Silva, GR Bowman, A Sosa-Peinado, X Huang PLoS Comput Biol 7 (5), e1002054, 2011 | 241 | 2011 |
| Discovery of multiple hidden allosteric sites by combining Markov state models and experiments GR Bowman, ER Bolin, KM Hart, BC Maguire, S Marqusee Proceedings of the National Academy of Sciences 112 (9), 2734-2739, 2015 | 211 | 2015 |
| Markov state model reveals folding and functional dynamics in ultra-long MD trajectories TJ Lane, GR Bowman, K Beauchamp, VA Voelz, VS Pande Journal of the American Chemical Society 133 (45), 18413-18419, 2011 | 206 | 2011 |
| Taming the complexity of protein folding GR Bowman, VA Voelz, VS Pande Current opinion in structural biology 21 (1), 4-11, 2011 | 205 | 2011 |
| SARS-CoV-2 infects the human kidney and drives fibrosis in kidney organoids J Jansen, KC Reimer, JS Nagai, FS Varghese, GJ Overheul, M de Beer, ... Cell stem cell 29 (2), 217-231. e8, 2022 | 192 | 2022 |
| Dynamics of an intrinsically disordered protein reveal metastable conformations that potentially seed aggregation Q Qiao, GR Bowman, X Huang Journal of the American Chemical Society 135 (43), 16092-16101, 2013 | 189 | 2013 |
Vijay PandeAndreessen Horowitz, Stanford UniversityVerified email at stanford.edu
