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Alexey Markin
Alexey Markin
USDA-ARS
Verified email at iastate.edu - Homepage
Title
Cited by
Cited by
Year
Quartet-based inference is statistically consistent under the unified duplication-loss-coalescence model
A Markin, O Eulenstein
Bioinformatics 37 (22), 4064-4074, 2021
282021
Robinson-Foulds reticulation networks
A Markin, TK Anderson, VSKT Vadali, O Eulenstein
Proceedings of the 10th ACM international conference on bioinformatics …, 2019
132019
On the extremal maximum agreement subtree problem
A Markin
Discrete Applied Mathematics 285, 612-620, 2020
112020
Reverse-zoonoses of 2009 H1N1 pandemic influenza A viruses and evolution in United States swine results in viruses with zoonotic potential
A Markin, G Ciacci Zanella, ZW Arendsee, J Zhang, KM Krueger, ...
PLoS Pathogens 19 (7), e1011476, 2023
102023
RF-Net 2: fast inference of virus reassortment and hybridization networks
A Markin, S Wagle, TK Anderson, O Eulenstein
Bioinformatics 38 (8), 2144-2152, 2022
102022
octoFLUshow: an interactive tool describing spatial and temporal trends in the genetic diversity of influenza A virus in US swine
ZW Arendsee, J Chang, DE Hufnagel, A Markin, A Janas-Martindale, ...
Microbiology Resource Announcements 10 (50), e01081-21, 2021
102021
Path-difference median trees
A Markin, O Eulenstein
Bioinformatics Research and Applications: 12th International Symposium …, 2016
72016
Manhattan path-difference median trees
A Markin, O Eulenstein
Proceedings of the 7th ACM International Conference on Bioinformatics …, 2016
62016
PARNAS: objectively selecting the most representative taxa on a phylogeny
A Markin, S Wagle, S Grover, AL Vincent Baker, O Eulenstein, ...
Systematic Biology 72 (5), 1052-1063, 2023
52023
CPTAM: constituency parse tree aggregation method
A Kulkarni, N Sabetpour, A Markin, O Eulenstein, Q Li
Proceedings of the 2022 SIAM International Conference on Data Mining (SDM …, 2022
42022
Taming the duplication-loss-coalescence model with integer linear programming
J Paszek, A Markin, P Górecki, O Eulenstein
Journal of Computational Biology 28 (8), 758-773, 2021
32021
Integer linear programming formulation for the unified duplication-loss-coalescence model
J Ansarifar, A Markin, P Górecki, O Eulenstein
Bioinformatics Research and Applications: 16th International Symposium …, 2020
32020
Cophenetic median trees under the manhattan distance
A Markin, O Eulenstein
Proceedings of the 8th ACM International Conference on Bioinformatics …, 2017
32017
Computing Manhattan path-difference median trees: A practical local search approach
A Markin, O Eulenstein
IEEE/ACM Transactions on Computational Biology and Bioinformatics 16 (4 …, 2017
32017
Consensus of all solutions for intractable phylogenetic tree inference
P Tabaszewski, P Górecki, A Markin, T Anderson, O Eulenstein
IEEE/ACM transactions on computational biology and bioinformatics 18 (1 …, 2019
22019
Solving the gene duplication feasibility problem in linear time
A Markin, VSKT Vadali, O Eulenstein
Computing and Combinatorics: 24th International Conference, COCOON 2018 …, 2018
22018
Efficient local search for Euclidean path-difference median trees
A Markin, O Eulenstein
IEEE/ACM Transactions on Computational Biology and Bioinformatics 16 (4 …, 2017
22017
Emergence and interstate spread of highly pathogenic avian influenza A (H5N1) in dairy cattle
TQ Nguyen, C Hutter, A Markin, MN Thomas, K Lantz, ML Killian, ...
bioRxiv, 2024.05. 01.591751, 2024
12024
Phylogenetic diversity statistics for all clades in a phylogeny
S Grover, A Markin, TK Anderson, O Eulenstein
Bioinformatics 39 (Supplement_1), i177-i184, 2023
12023
The Asymmetric Cluster Affinity Cost
S Wagle, A Markin, P Górecki, T Anderson, O Eulenstein
RECOMB International Workshop on Comparative Genomics, 131-145, 2023
12023
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