| Emergence and interstate spread of highly pathogenic avian influenza A (H5N1) in dairy cattle TQ Nguyen, C Hutter, A Markin, MN Thomas, K Lantz, ML Killian, ... bioRxiv, 2024.05. 01.591751, 2024 | 36 | 2024 |
| Quartet-based inference is statistically consistent under the unified duplication-loss-coalescence model A Markin, O Eulenstein Bioinformatics 37 (22), 4064-4074, 2021 | 31 | 2021 |
| Reverse-zoonoses of 2009 H1N1 pandemic influenza A viruses and evolution in United States swine results in viruses with zoonotic potential A Markin, G Ciacci Zanella, ZW Arendsee, J Zhang, KM Krueger, ... PLoS Pathogens 19 (7), e1011476, 2023 | 29 | 2023 |
| PARNAS: objectively selecting the most representative taxa on a phylogeny A Markin, S Wagle, S Grover, AL Vincent Baker, O Eulenstein, ... Systematic Biology 72 (5), 1052-1063, 2023 | 17 | 2023 |
| octoFLUshow: an interactive tool describing spatial and temporal trends in the genetic diversity of influenza A virus in US swine ZW Arendsee, J Chang, DE Hufnagel, A Markin, A Janas-Martindale, ... Microbiology Resource Announcements 10 (50), e01081-21, 2021 | 14 | 2021 |
| Robinson-Foulds reticulation networks A Markin, TK Anderson, VSKT Vadali, O Eulenstein Proceedings of the 10th ACM international conference on bioinformatics …, 2019 | 14 | 2019 |
| Dairy cows inoculated with highly pathogenic avian influenza virus H5N1 AL Baker, B Arruda, MV Palmer, P Boggiatto, KS Davila, A Buckley, ... Nature, 1-3, 2024 | 13* | 2024 |
| RF-Net 2: fast inference of virus reassortment and hybridization networks A Markin, S Wagle, TK Anderson, O Eulenstein Bioinformatics 38 (8), 2144-2152, 2022 | 12 | 2022 |
| On the extremal maximum agreement subtree problem A Markin Discrete Applied Mathematics 285, 612-620, 2020 | 12 | 2020 |
| Path-difference median trees A Markin, O Eulenstein Bioinformatics Research and Applications: 12th International Symposium …, 2016 | 7 | 2016 |
| Manhattan path-difference median trees A Markin, O Eulenstein Proceedings of the 7th ACM International Conference on Bioinformatics …, 2016 | 6 | 2016 |
| CPTAM: Constituency parse tree aggregation method A Kulkarni, N Sabetpour, A Markin, O Eulenstein, Q Li Proceedings of the 2022 SIAM International Conference on Data Mining (SDM …, 2022 | 4 | 2022 |
| Taming the duplication-loss-coalescence model with integer linear programming J Paszek, A Markin, P Górecki, O Eulenstein Journal of Computational Biology 28 (8), 758-773, 2021 | 4 | 2021 |
| Cophenetic median trees under the manhattan distance A Markin, O Eulenstein Proceedings of the 8th ACM International Conference on Bioinformatics …, 2017 | 4 | 2017 |
| Integer linear programming formulation for the unified duplication-loss-coalescence model J Ansarifar, A Markin, P Górecki, O Eulenstein Bioinformatics Research and Applications: 16th International Symposium …, 2020 | 3 | 2020 |
| Solving the gene duplication feasibility problem in linear time A Markin, VSKT Vadali, O Eulenstein Computing and Combinatorics: 24th International Conference, COCOON 2018 …, 2018 | 3 | 2018 |
| Computing Manhattan path-difference median trees: A practical local search approach A Markin, O Eulenstein IEEE/ACM Transactions on Computational Biology and Bioinformatics 16 (4 …, 2017 | 3 | 2017 |
| Asymmetric Cluster-Based Measures for Comparative Phylogenetics S Wagle, A Markin, P Górecki, TK Anderson, O Eulenstein Journal of Computational Biology 31 (4), 312-327, 2024 | 2 | 2024 |
| Phylogenetic diversity statistics for all clades in a phylogeny S Grover, A Markin, TK Anderson, O Eulenstein Bioinformatics 39 (Supplement_1), i177-i184, 2023 | 2 | 2023 |
| Consensus of all solutions for intractable phylogenetic tree inference P Tabaszewski, P Górecki, A Markin, T Anderson, O Eulenstein IEEE/ACM transactions on computational biology and bioinformatics 18 (1 …, 2019 | 2 | 2019 |
Oliver EulensteinProfessor of Computer Science. Iowa State UniversityVerified email at iastate.edu
